GgaINT0111498 @ galGal4
Intron Retention
Gene
ENSGALG00000022702 | CHRNA10
Description
neuronal acetylcholine receptor subunit alpha-10 precursor [Source:RefSeq peptide;Acc:NP_001094506]
Coordinates
chr1:193909613-193910675:+
Coord C1 exon
chr1:193909613-193910145
Coord A exon
chr1:193910146-193910217
Coord C2 exon
chr1:193910218-193910675
Length
72 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TTGCCCCTCTCACCCCGTAGGGA
3' ss Score
11.93
Exon sequences
Seq C1 exon
CGCCGATGAGCGTTTTGGTGGCTCCATGGAGACCAATGTGGTGCTGCGCTCCGACGGACACATCATGTGGGACAGTCCGGCCATCACCAAGAGCTCCTGCAAGGTGGACGTCTCCTACTTCCCCTTCGACGGGCAGCAGTGCCGCCTCACCTTTGGCTCCTGGACCTACAATGGGAATCAGATCGACCTCCGCAACCTCCTGGACACGGGCGACCTGACCGACTTCGTGGAGAACGTGGAGTGGGAGGTGCTGGGCATGCCGGCCACGCGCAACGTGGTCACCTACGGCTGCTGCTCGGAGCCCTACCCCGACGTCACCTACATGCTGCTGCTCCGCCGCCGCGCCTCCTTCTACATCTTCAACCTGCTGCTGCCCTGCGTCATGATCTCCTTCCTGGCGCCGCTGGGCTTCTACCTGCCTGCTGACTCCGGGGAGAAGGTGTCCCTGGGGGTGACGGTGCTGCTGGCGCTCACCGTGTTCCAGCTGCTGGTGGCAGAGAGCATGCCGCCCTCGGAGAGCGTGCCGCTCATCG
Seq A exon
GTGAGCCAAGGGGAGGGAGTGGGGCGCCCGGCGGCGAGATCCGTGCCCCTCATTGCCCCTCTCACCCCGTAG
Seq C2 exon
GGAAGTACTACATCGCCACCATGACCATGATCACCGCCTCCACTGCGCTGACCATCTTCATCATGAACATCCACCACTGCGGGCCGGGTGCCCGCCCGGTGCCGCCCTGGGCGCGCCGCCTCATCCTGCACCACCTGGCGCGTGCCCTCTGCGTCTGTGAGGTGGGCGAGAGCTGTGGCCGCCCCCAGAGAGAGGGCACGGGAGGGATGGGGCCACGGGACCCCCCCGGGGAGGGCGTGGAGCCGGGGCTGTGCCCCCGCAGCCGCTGCCTCTGCCACCACCACGCGGTGCTCAGCAGTGTGGGGTACATCGCCGGCGTCTTCCGACGGCACCGCACCGCCCAGCGCCGTGCTGCAGAGTGGAAGAAGGTGGCCAAGGTGATGGACCGCTTCTTCATGTGGGTCTTCTTCCTCATGGTCTTCCTCATGAGCGTGCTGGTGATTGGCAAAGCTGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022702:ENSGALT00000022103:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.112
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=PD(55.6=64.2),PF0293211=Neur_chan_memb=PU(45.5=31.3)
A:
NA
C2:
PF0293211=Neur_chan_memb=PD(53.7=43.1),PF0293211=Neur_chan_memb=WD(100=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGATCTCCTTCCTGGCG
R:
TGGTCATGGTGGCGATGTAGT
Band lengths:
181-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]