GgaINT0112123 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:80920097-80921374:-
Coord C1 exon
chr1:80921288-80921374
Coord A exon
chr1:80920166-80921287
Coord C2 exon
chr1:80920097-80920165
Length
1122 bp
Sequences
Splice sites
5' ss Seq
CCGGTATGT
5' ss Score
9.2
3' ss Seq
TTGCCTACTTTCTTATTCAGTGG
3' ss Score
7.3
Exon sequences
Seq C1 exon
GCTCCTATAACTCCTTCAATGAGGCTGTCTATGAGGAGATTGACTATAAACTGATGAAGGAACAGCAAGGAATGTCTGGCCTCTCCG
Seq A exon
GTATGTGTGTCTTGTTCTCATCAAGAGAAACAAATTGAAGCTAACTTTTTCTGGTGGCCCCAGTCTGAAACTGTGCAGCTCACATATTTACCAGGAAACTAAGCAGTTCCTACACTTGAGTTTCCTGTCCTGTGTATTCTACTAATTCTTCTCTAAGGGACAATTCATTTTGTGCTGACTGGCACACTACCACTGCAGCCAGAGAACACAGTTCAGCATGCCTGCCTCCCAGACCCCATCCCACCCACTCCCTCACAAAAAAAAAAAAAAAAAAGGAAAAATATGAAAGCTTTTGCTACAGGTGTTTAAAGCAGGAATACAGGAATAAATAAATCTGTAAGCCCCTACCAACAAGCCACATGCATCTGTCATCTTATTCCTGTTGATTGCTTTCTCACTTTATGGCTTGCCTCTCTCACAACTTCCAGAAGGATTCTTGGCTTTTCTATTGCAAGCCCTTTGCATTGTAGGATTAATACCAACTGCCCAAGAATCTGCTTCTCCTCCAAAGAAGCACCTTAGCTCACTTAGTTATCTTTACTACAGTACTGATTGAAGACTGCAGGCACTCTTCCAAATGACAGTGTCGATCATGTGCTTCAAGTAGAAAGAATGTGATCAGATTTGACTGGCTTCCTTAATTTATTTACTTAGCCTACCAGTCCTTTTGTATGCACTGAAGTCACTTAAATGACTAAAGTCACTTTCCTGTATATTATATCATGCATTTTTTTCTGGTTGATCTTTACATTCTATGAACTAGAATGTTTTTGTTTGTTTGTTTTTTTGACTCTGTTTATACATTTTATCTGTATTAACTTAGCCACCAATCAGTAGCAATATAATTAGTTACTATACATCAAAGGTCCTTCAGAACTATATTTAGATATGTCCCCTGTTACCCTTATACGTTACTATGGCTGCCTTGATAAACAGCTATGTTAGAGAGCAATAAACAGAACATATATAATCCACACTACCAGTCATACTCAACCCCATACTACTTGACTTAGATATATAGCTTCATGAATCTTCAACCTGTTTTTCACATTATGCAGTTCAGCAGCTTAGGAGAGTTTGCTCTGACATCACACTTTCTCATTTGCCTACTTTCTTATTCAG
Seq C2 exon
TGGGTTCCACAAATGAACGATTCTATGGTGGAGACTGTGACAAAGAAAGCGGTCCTGGAGCAACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]