GgaINT0112583 @ galGal4
Intron Retention
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75793209-75794520:-
Coord C1 exon
chr1:75794375-75794520
Coord A exon
chr1:75793359-75794374
Coord C2 exon
chr1:75793209-75793358
Length
1016 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATGTGTTTGATAAATTTCAGGTC
3' ss Score
8.56
Exon sequences
Seq C1 exon
ATCAAAATGGCACCTTCATGATTCCACTTGTGGTCAATGAGAAAATGGCTCCTGCCCTTCGGTTGCTTGTATATATGTTACATCCTGCCAAGGAGCTGGTAGCAGACAGTGTACGATTTTCAATTGAGAAGTGCTTCAAAAACAAG
Seq A exon
GTGAGAAGCACTAAGAATGAGTCTTGCCACATAAATACAAATCCTTTGCGCACACATTCACAACAGTTTCATTTCTTCTTCATTCTCCTTTTTTTTTCTCTCTTTGGCCTCATATCTTTTCTCTACCTCCACCTAGCCTCATTGCCAAAAGGTAAATCCTCTAAAATTAAAATCTACTTTTCTGGAAACGCACTACTCTCAAATTCTACCTGGTTCTCTAAAACTATACTAGTGTCCTATATAGTTTGGACTGTCTGTTTTCTAACCATTAAAACATGTTTTAGTCTTATTCCACTTTACAATGTAATCTTATTTTTTACACTTTTTTTTTACAGGAGAAAAAGTGAAAAAGAATAATAATAATCTTAGGGTTTAACTTTTTCATATTTCCTTTTTTTTTTTTTTCTTAGCAAAATCTGAACACTGATTTGTAATTTTGAACTGAGATTTCAACTTTAAGGATTTTAAGGTTTTTCTTATCTTTTGTTCTTGAAAGCTAAAAGATATTCAAACATAAAACAAAATATTAGAAAATAAGACAAGTGAAGCTAAGCAAATGTTTTCATTTATCTCTTGTCATCTCCTCCTACTATTTTTTCTCTCTTATCTAACACAAGTATCAAGATCTTTTTTTGCTTTGAATAGATTCAAAACAGAATTATTTGCACTGTTATTTGTAAGGCAGTACAAATCTAGTAAAAATATGATTTGCTCATTATAGTTCTTATTACACGCAGTCAAGTGTCATAATAAGATTTTGTTTGACAATAGCAGCAGCAGAATAACACTTTATTTTAAAATCAGGTAAGTTACCACAACATAGGAGTCTAAGTGTGCTTATTGCCTAAGCCTGCATTATAGTTGAGGCCTGGTTAACTGGCGCAGTGGAAACCAGCACCTTCTAGTAAGACCAACAGTGCTTTAACAGAAGAGTCTTATGTTATTCTTCTCACACATCCAGAGAAGCCTTAAGCAGTAAGGATTAGCCATACCAACATGTGTTTGATAAATTTCAG
Seq C2 exon
GTCCAGTTGCAATTCTCTGAAAAGCAGATGCTCACCACTTCCAATGTCAGTTTAGTGATTGAAGCTGCTGCTAATTCATTCTGTGCTGTGAGGGCAGTGGATAAAAGCATGCTGCTTCTGAAGAGTGAGACAGAGTTGTCTGCAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.4=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(26.4=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAATGGCACCTTCATGATTCCA
R:
TGTTTCTGCAGACAACTCTGT
Band lengths:
294-1310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]