GgaINT0112599 @ galGal3
Intron Retention
Gene
ENSGALG00000022962 | A2M
Description
NA
Coordinates
chr1:79421686-79422418:-
Coord C1 exon
chr1:79422203-79422418
Coord A exon
chr1:79421811-79422202
Coord C2 exon
chr1:79421686-79421810
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TTCTTTTTTTCCTCTTCCAGACA
3' ss Score
11.48
Exon sequences
Seq C1 exon
GACACGGTGGTTGCTCTTCAAGCCCTTGCTGCTTATGGTGCGGCCACCTACAATTCAGTTACACAAAATGTCATCAAGATCAATTCCAAGAACACTTTTGAGAAAGTATTTACTGTTAATAATGAGAACAGGCTCCTACTGCAACAGACTCCCCTTCCTCAAGTCCCTGGGAAATACAGCTTAACAGTGAATGGCACTGGATGTGTACTTATACAA
Seq A exon
GTAAGCGTCTGCCCTCCTCTTCACTGTGTCCTACATTCTGCATGCAACACAGCTGTTTTTGATGACTTTTCATCTGATTTCTCTTTCTTTTTCCTAATTATTTGATTTTCCTAAACAATTTAAACTGCCTTTTCTCTGTTCCATATTCTGACTCCTACGAAATCACAACATGGCAAAAAAAGAGTTTTTCTGATCATTAAGTGATTTCTAATGTGTGCTGCCCAGGTACAAGCACCTTTATTGACAAAATACAAAAGACTGATGTGTCTATCTTCAACATAACCAAGAATCATCCACATCCCCTGGAAACTTCCCTCAGTCTGATGTTCTATTTTATAATTCAAAGAAAAATCTTTGGCATGCTTAGAAAGGTTCTTTTTTTCCTCTTCCAG
Seq C2 exon
ACAGCACTGAGATACAACATTCACCTTCCAGAGGGAGCCTTTGGATTTTCCCTCTCAGTACAGACATCAAATGCTTCCTGCCCACGGGATCAACCAGGAAAATTTGATATTGTACTCATAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962:ENSGALT00000037194:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.2=18.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGGTGGTTGCTCTTCAA
R:
TGAGTACAATATCAAATTTTCCTGGT
Band lengths:
334-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]