GgaINT0112642 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56848507-56849357:-
Coord C1 exon
chr1:56849262-56849357
Coord A exon
chr1:56848703-56849261
Coord C2 exon
chr1:56848507-56848702
Length
559 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
TCCATTTTCTCACACTGCAGACC
3' ss Score
8.3
Exon sequences
Seq C1 exon
GCAGGGGAGAAGAAATACTGCATCTTCACAGAAAACAGCATGAGACTGTACACCATCCAGATCGGATGCCAGCCAAAATGTGCAAAAACTATCATT
Seq A exon
GTGAGTACACCGTTCCTGTCACAGCAAAGCTGGGAACCCCCATCTATGATCTTTGTAATTGTCACTGAACACGCAGAGCTTGTCTGTGTGGTCCCTGGCAGCATTCCTTCTTGTATCTTGTATCCATCTAGGATCTAGACACAGCAGAGATGGGATAAAGGCTGCTGATGGCCTGAGCAGAGGAAGGGGTGGGATGCAGAAGCAGATTGGAAGGGGTCACAATGTGCTTGTCTTTCCACCTTCCCCATGGTGACCCATGTCGATCCTGTGAGTGGGCACGGTGAGGGTGGGTTGACAGTTAGACTTGGTGATCTTAAAGGTCTTTTCCAACCTTGATGATTCTAGGGTTCTATGGATCTATGTCCCAGCAGGGAACTTGGGGGAAGCACAGCAAGGAGCAAGGCTGCAAAGAGCAGAGCTAAAGCACTGCTAAACTCTAGGCCTCTAGCTCTCTCCACCCAGCATCAGACCCAAGAGACAATTCCCAGCGGCCTCCTCCTTGCTGCCATGCTTAAGGGTCCCCACTGCCCTTATCCTGATCCATTTTCTCACACTGCAG
Seq C2 exon
ACCAGGGAGTGCTGTGCTGGCTTCTTTGGACAGCAGTGCCAGCCCTGCCCCGGCAAGGCAGGTAGTGCTTGCTTCGGCAATGGCATCTGCCTGGATGGCATCAATGGCAGTGGCATCTGCCAGTGTGGAGCCGGGTTTGTCGGCACGGCCTGTGAGAGCTGCGCAGAGGGCAAGTACGGACGCAACTGCGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGGAGAAGAAATACTGCA
R:
CAGTTGCGTCCGTACTTGCC
Band lengths:
284-843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]