GgaINT0112658 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56834535-56836240:-
Coord C1 exon
chr1:56836094-56836240
Coord A exon
chr1:56834592-56836093
Coord C2 exon
chr1:56834535-56834591
Length
1502 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
CTTTCAATTATGTACAACAGGGG
3' ss Score
5.28
Exon sequences
Seq C1 exon
GGCACCCTTTTCCTGAATGACAGACAGTGCAAGATCGTGCAGCGGCAGCTGGAGTTTGATGGAGGCATTGCCTATGGCATAGACTGCCTGCTGATGGACCCCAGCCTAGGGGGCCGCTGCGACAGCTTCTTCGCCGTGGACATCATG
Seq A exon
GTCAGTCCATCTCTTTCTGTCATACTATCACTCACTAAAGACAGCCCATGGGCCAAACCCTGCCTACAGAAGGACACGGGTCAGTGCTCACAGCAGCTTTGGCACTAGTGAGGTTAGGTTCCATCACTTCAGGTTGCCTTCACCTGTGCTTTGTTTCTATCACACTTGTTGGAGACAGGCTTTTGGTCTCTCACATTTCTTGCTTTCATAGAAATAACACTCAACACACTTAAACTGGCACAGTTAGCATGGATGAAGTCTCTACCATGAGCTTCAACGTGTCCTACAATCAGGAAGTTTCAAAACCCACCAATCTTCAGATGTTCACAGCACACGCAGGGCACACTTTGCACTGCCAGAAAGGGCCACGTTAGCTTCCAGACAGAGATGGAGGTTTTATGAGATTCATCACTGACCTAAAATACCCTACTGATGGCCTTTTTCATAGAGCGACCATTTGGTGCTAGAAGAGGACAAAGTAAAGACGATAAAACACATACTTCCTGTTAGGCTTGGGCACCTTTGCTCCACAGATTGTGGTTTTGCTTCTGAAACTCCTGTTAATTTCATTGTTTCCAAACCAAAACATTTTTAAATGGTTTAAAGACCAAATTTACTTTAGCTTAACTCAAAACACATTAAAAAAAATCACTTAGAAGTAAATAAAATTTCATGTAATCATCTTAAAAACATCTTGGAACTCATATTTCAGTCAGGAAACCAACAACTTTGCATAGCCCATCTGCTTTAGTGTACAGTAAATAAGTATACAGATGCCATACAGTATACAAAGAAGTTAGGCTGGTAAGACTACCACATTTGAAAAGAATCAGATATAAATGAAAGGTGCTCACCAGTATTGTAGGCTCCCAAAAACTCCACAAGGAGGGATCTCCAGGAAGAAATCCTTCCTCAGTGGCAGTCAGCCTTTAAATGGGGGTCTAGGAGAGGTGCAGCCTGGCTCCACCCCTTCCAGTCACACAGGTGAAATGCCTGACTCAGTGCTTGCCTCAGGTGGTCAATCAGAGGTTCAGGCCATGACTCAACAGTTCCCATGCATTCAGTTACCTCTTGTTTCCTTATTTTGTAAATTGAAATGGAAATGTTAATTTCAATTAACAAAAATCAGCCCCAGAATGCCTGTGCTTCCCAAGAAGTAACCAATTACCGGTACTTCAAATTATACACCCAGATCTGGTGCACCCCATGTGAATATTTTATTAAAGAATACCCACCATCTCATTTCCTTACTTGTTTAGATCAGGAGTAGATTACTTCTGGGACAAACATTTGTTTCTTGCATTTCATGGCAATAAATCAGTGCAACTATTTTGTTGTTGTTCTCCTCTCCTTTCTCCAAAGCTATATTCTGTTTCAAATGTGATAAGCCCACATTCTTTTCTGCTCGTATTTGCTGCTCACACAAAACAGACACTTTTTGTCCACTCAAAATAGCCTTTTGTTGCCAGTATGCTTATTTTGCTTTCAATTATGTACAACAG
Seq C2 exon
GGGTACTGTGCTAGCTGCTTCAGTGGTGCCAAATGCCCTCCAGGGACAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=PD(24.1=65.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCCTTTTCCTGAATGACA
R:
CTTTGGTTTTGTCCCTGGAGG
Band lengths:
204-1706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]