GgaINT0113148 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8106376-8107744:+
Coord C1 exon
chr1:8106376-8106549
Coord A exon
chr1:8106550-8107554
Coord C2 exon
chr1:8107555-8107744
Length
1005 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTTTTCCTGATTGTTTGCAGGGT
3' ss Score
9.25
Exon sequences
Seq C1 exon
GACCACTCCGCCTGCTTCAGTGACTGCTTGGTGTCATACATCAAGGATAACCAGACCCTGAGTTATGATTTTAGCAACCTCAGCCAGGTGGGCTCCTTAATGAGTGGGCCGAGCTTCACTTCCCGTGGGACCAAGTTCTTCCACTTCTTTAACATCAGCCTGTGTGGAAATGAG
Seq A exon
GTGAGCTCAGTGGGTGTTGAGGGTTGAGTTAACCAACGTGTAGTCCATGTTGATGCTTGGTGGGATCGCACTGAGACAGTGTGCATCACTGCTGTGCAAATGCTTTCCTCTGTATCTTGCCCCCAGTCAGATTTGGAGTGTACCAGAGCATATTGTCACATACAAGAATTGACATTTTGGAGCAGTACCAGATGATTATCCCTTGAAAGCCAATGCATGCAGTTTACATCAATGTTTATCCCTGTAAAGTTAGGAAATCTCTTCTCCATATACCAGAGGGTTTGCATGAGATAAACCAATAGTTGTATTTCTTTAAAGAATTTTGCATACTTTTGGGCTTAAATGTGTGCATACCTATCTGGATTAGAGCTGATGACAGATCCATAAAGATACTCCCCTGTGGATCTGCTCTTCATTTCTCAAACATTTTCCCTGGTACTATCAGACCTAGAGGACCAGGTCTGTGTGCTTGGCATTTTGGAGGGTCAAGACTGCCAAATTTCTTGATTTGGCTTTCATTGCTGCTGTTGTGAGATTCTTACATTAGTCTCAGTTTGTGACATTAATGCGGTCTTGGAGGCTGTGTATCTGCTTATGGATTTAATGTAGTCATGCTTTGAGAATATTTTATCTGGTTTAAATTCCAAATAAAGAGGTATTCTACAGTGCATTATTTACAGGCAATATGTTTTTTCTGTACAAGCCATTTTATTATGCTCTGCAAGTAAGCACTGTGCTGTCAAGATAAACAGAGAAAAGTGCTTCGTAGCACAAGTTTCTGATAAGACCCATACTGGAGGTGACATCTTGTTTCTGAGTCTAAACGAGGCTTTAATCGGAGCCTTCAGAATGACACAGTTTATTGCTGCAATTTGTTTCTCTCATGATAGAAACATGGAGCTATTTCTAAGACGAATGAAGCTCATACAGTTTGCAATGTCTCCCGAACTTTTCCACATCCTATCAACAACCAACAGCTTCCCCATTTTTCCTGATTGTTTGCAG
Seq C2 exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCAGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=PD(15.7=13.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCAGTGACTGCTTGGTG
R:
ACCTGTCAGCAAGGCTATTGG
Band lengths:
346-1351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]