GgaINT0114689 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:174776381-174776632:+
Coord C1 exon
chr1:174776381-174776462
Coord A exon
chr1:174776463-174776543
Coord C2 exon
chr1:174776544-174776632
Length
81 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CTCATTTTCCTCTTATCTAGGGA
3' ss Score
9.53
Exon sequences
Seq C1 exon
GTGAAAAAGGCTATGACCCTAAGTACTTCCACTACAGGGTAGAAAGGATCTTTATTGATGACCACAATGTCCCAGCATTACA
Seq A exon
GTGAGTCTCGTTACTAAATACTTGCACCAGCATAACTTCTCATGCTTTTGCTTTGGCTGCACTCATTTTCCTCTTATCTAG
Seq C2 exon
GGACATGCTGAAATTCACTGCCAGTGTCCGTGAATGGATGAATCAAGATGAGAAGAATATCATAGCAATTCACTGTAAAGGAGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031:ENSGALT00000027516:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=FE(21.1=100)
A:
NA
C2:
PF0078215=DSPc=FE(23.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAAGGCTATGACCCTAAGT
R:
TGCCTCCTTTACAGTGAATTGCT
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]