GgaINT0115182 @ galGal4
Intron Retention
Gene
ENSGALG00000015850 | SCAF4
Description
splicing factor, arginine/serine-rich 15 [Source:RefSeq peptide;Acc:NP_001012840]
Coordinates
chr1:104012814-104013450:-
Coord C1 exon
chr1:104013350-104013450
Coord A exon
chr1:104012862-104013349
Coord C2 exon
chr1:104012814-104012861
Length
488 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
CATACTAGTTTTTCCCACAGGAC
3' ss Score
7.47
Exon sequences
Seq C1 exon
AAGCTGCTAGATCGGTTTGACTACGACGATGAACCAGAAGCAGTGGAAGACTCAAAGAAAGAAGATTCAGCTCCTTCTCCTTCAGTTTCTCAGCCTGCCTT
Seq A exon
GTGAGTTGTCTTCGTCATAATAAACAATTATTTGTTATAAAATAGCTTTTGTTTTCAAAGCTTACTAGAATTCCAAGTTTTCAGTGCTTCACTTTTAACAGTCAAAAGTTAAAATACTGTTATTAACGTTTTCTGTTCCTTTGGTGATTCATTGTAGATTTGGCATGTGGCATCATTGATTGAGGAATGTATTCAGTAGAACAAAGCTCAGTCTTGGTTTCAGGATGAGTTCTGTGTTTCGAGCAACTGAGTGTGTCAGGGCATTGTTAATAATCAGCTGAACTGCTTTGCTGCCTGGGGAAAAAAAAGCTATTCTAAACACTGTAGTAATCTTATGTATTAACTACTAAAAAAAATAAGTTTGGCTTTGCAGCTTTAAGATAGCAGATTGAATACCCATGCAAACTAACTCAGGCTCCTCCTTCTTTTTTGATGTGCGTTTTGGTGAAGTCTTGAATTACGTGATCACATACTAGTTTTTCCCACAG
Seq C2 exon
GACCTCTCTCTCATTCCATGCACAGGCTGGATGGTGCTCAGTACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850:ENSGALT00000025555:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]