GgaINT0117835 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79255590-79255893:+
Coord C1 exon
chr1:79255590-79255648
Coord A exon
chr1:79255649-79255813
Coord C2 exon
chr1:79255814-79255893
Length
165 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGAT
5' ss Score
3.06
3' ss Seq
TTTTTAAACATACCATATATGTA
3' ss Score
-2.36
Exon sequences
Seq C1 exon
TTATACTTCAGGGCATCTAATGAGAAATACTAAGAGAAAATGTGGGTGTTATATTCATG
Seq A exon
GTAGATGGTTAAAAGTTGATTTGTCTCTTTAGAAAGATACAGAAGGAAAGGGAAGATTGTGGACAAAATATTAAACTTAGATTTTTGCTAAAACTTCATAAGAGACAGAGTTTTTGACTTGACTATTGATCTTACACATATGAACTTTTTAAACATACCATATAT
Seq C2 exon
GTAATCTGCCAACTAGTTCAGGTACAATCTTAGTATTTTCAGCTGTCTCAAGCTCTTGTCATGTCATACTGATTGCTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATACTTCAGGGCATCTAATGAGA
R:
TAAGCAATCAGTATGACATGACAAGA
Band lengths:
138-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]