GgaINT0117849 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79264997-79266090:+
Coord C1 exon
chr1:79264997-79265173
Coord A exon
chr1:79265174-79266008
Coord C2 exon
chr1:79266009-79266090
Length
835 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
3' ss Seq
TTTTGCCCCTGTCTTCATAGGTT
3' ss Score
11.64
Exon sequences
Seq C1 exon
GGGATATCATGGGCCCAGCACTTCAAAATTTAGATCAGCTGCTTCAGATGCCTTTTGGCTGTGGTGAACAGAATATGGTTCAGTTTGCACCAAACATCTTCGTACTCCAGTACTTGAAGAAGACTAAACAATTGGATCCAGAAATTGAAGTTATAGCACTCTATTTCCTGAGAACTG
Seq A exon
GTAAACAACGTCCTTCCTTCTATTCTGGGGAAAAAAAAAAAAAAAGTGCTATAAATCTAGAGTGTGGAGCATTTGTTTGATGAGTGAGTGCAAGACAAGAGTGAAAGCAATGCCTGAGCTGTGCCAAAGAAAGATATCACTGAGTATAAGGAAATGGTTTCAAGAAACGTAAAACATCTTTTTGAAGAATCATTATTTCTCTCTCTGGATATTATTGAGGTACCAAGCCTACTTTTCTCAGGAGGGTATAAGTGATTAATGATTTCCATTATACTGTGATGCCATTCTGTTATCAGTCTGATGCAGATACCATTTTTTTTTGTGGAAACAGGGCAACAGTTGCTACTAAATGGAATAAAGAGTGGCCATAACAGATAGATAGTTTAGGTAGTGTTTGTTTATGTCCAATATAATTCAAATTTAATACAGTGCTAGTATCTTATTTTGCAGTGCACATCATATCAGGATTTCTCTTTGTCCCTTCTGAGAAAAGCCTTCTTAGTCACTCCTACTGATTTTTCTATTCACAGTAAGGTGTCGGTTAGGGTTGCTTGGGGAGTGTGGGGAGGTGAAATGGCTGAGCATGTCCCTACTCTGCAAAAGCAGCTAGTAATGTAGAGCAGCTGTATGGCACGCGTCAGTGATGCTGCGCAGCTGTTTCTTGTCACTCTGATGCTGTGGGATGCTCAAGGCATTGTGATGTAGTAGGTTTGGCTCAATGTCTCTGTAGGAGCTGGTGAAGTCTCTTGCTGTAAAAGCCTTCTCCCTACACGAAAAGCACAGTTTGAGTGCTCTTAGTTCAAACTAAGAGTTGCTTTTGCCCCTGTCTTCATAG
Seq C2 exon
GTTACCAGCGTCAGCTGCTCTACAAACATGATGATGGCTCCTACAGTGCCTTTGGGAAGTCTGACACCCAGGGCAACACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
NA
C2:
PF076789=A2M_comp=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCATGGGCCCAGCACTTCA
R:
CATGTGTTGCCCTGGGTGTC
Band lengths:
255-1090
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]