GgaINT0117851 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:79266174-79267868:+
Coord C1 exon
chr1:79266174-79266330
Coord A exon
chr1:79266331-79267793
Coord C2 exon
chr1:79267794-79267868
Length
1463 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TCTGTCTGTGTGATTTACAGGGT
3' ss Score
10.07
Exon sequences
Seq C1 exon
GCTGACAGCTTTTGTGGCCAGGTCCTTTGGGCAGGCCAGCTCTTACATTTACATCAATAAAGATCACGTACAGGATGCTGTGCTCTGGCTGCAGAAGCATCAGTTATCCAATGGTTGCTTCCAGAGTGTGGGGAAGCTCTTCAATAATGACTTGAAG
Seq A exon
GTATGACTAATGGCAATGGAAGTAGGAATGGGAGAAACACAATATGGGGATGGGGTCACTTCCCCAGGTTCTTCTGATGTGCACAGTAGCACAAAGTATGGTTTAACTCAGCCAAACATCTTCCCAGAGCAGAATGAAGCATAGCCTAGAACAACATGCATTTCCTCTATGTGAGTTTTTAATCTCTGCTGGGCAATCTCATTTTATCTTTATATAAATGGCACTGTGACTGATTGTGCCAAGGCACATTAGGGGAACAGGGAGAAATATTTGTATTCTATAGTGCTTGTACAAAAAACTCTGGCTGGATTGTTCCTCTTCTCATGCATTATGATCCACAGTAAAGACTCTCCAGATAGGCCTAACTTTGTGTTTTAACATGAAGACACTGTGGTCCCTTCACTGCCCACCAAGTACTACTTTTCCTGGAACCTGGCACTCCCAGATTGATCCCTGCACGGTAGTTGGAAATGCACAATGAACATGCCCTGATGCTCAAGTACCAAACATCTGCATGCAGTGTAGCAGTACATGGGTTCATGTGCTCTGTAAAGGAAAAAATAATCAAGACTGGTCAGATTGCAGAGTCACCCTACTAAACACAGGCACATGTCTGAAATAAAACAGGCTGATATTTTAGCAAAGTAAAGGGCTACAGTTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCCTCCTTCCTTTCTTTCTCTCTTTCTTAATTGGATGGAGTACAAACTAAAACCAGAGTGTACAGATAGACTTTATCCTTGTCCGACTTCCACTCGTTTCTCAACATGGGCTTTCTATTTGAATAGATCTTTCAGGGCACAACAAAGTTCCCTCTCTTTGCACTTTGAAGTTTCTGCTATCAGTGTGAACAATGCCTCAGAGCATCGTTTATGATGCAGTCTTGTCTCTTCTCTGAGGATGCTGGCAGAACTTCACTGGGAATTCTTGTCCTCTGATAGAAGAAGAGACTTCTGGATGCCTGTTTGCCCTTGTTAATCTGTAGCTTCTCACAATCAGCTGATTTGTATACAAACTTACATCTTGTATACAAATCCTGCACCATAAAACCTTTGTTCTAGTGTCCACTTGTAACATATTAAAAAAAAATAAATAGCTTACCACCATATCAAGAATGCCCACAGGCATGCTACTATACTCTGGTAGTTATGTTATCCATAGGCGGTTTCAGTAGTTAAACAATGACAGGTCACATACTGTTTGGAGGCAAGCAATGTTCATTTTTGTCTGTCTGTGTGATTTACAG
Seq C2 exon
GGTGGTGTGGATGATACAATCTCATTAACAGCCTATGTCGCTGCTGCCCTTCTTGAGCTCCAATTGGAGAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014252:ENSGALT00000023051:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(21.8=100)
A:
NA
C2:
PF076789=A2M_comp=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAGCTTTTGTGGCCAGG
R:
CAATTGGAGCTCAAGAAGGGCA
Band lengths:
222-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]