GgaINT0119184 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90804606-90805505:-
Coord C1 exon
chr1:90805335-90805505
Coord A exon
chr1:90804786-90805334
Coord C2 exon
chr1:90804606-90804785
Length
549 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATCTTTTTTTAATTCAACAGCCA
3' ss Score
6.94
Exon sequences
Seq C1 exon
TTCAACAGCTTTGAGCAACTCTGCATCAATTACACTAATGAGAAACTGCAACAGTTTTTCAATCATCACATGTTTGTCCTCGAGCAAGAAGAATATAAAAAAGAAGGCATTGAATGGGTATTTATTGATTTTGGCATGGACCTGCAGGCCTGTATTGATCTAATTGAGAAG
Seq A exon
GTAGGTACAGGGCCCTAGGGTGTATTTACTGAAATTTTTTTTTCTTCATGATATACCTCTGGAGTTGTTTTCAAATCTCAGGGAACAGAGCAAGATAAAAAGCAGGACAGGTTTCTCACCATTGTATACGCAATATGAATCAAAGGAAAATCAGCATTTGTGGCTACTTTCCTTTTATTTCAGTAAGCTTGCCTCACACAGCCAACAGCAATCAGAAGTTGTACTGGGTTTTTTTTTACTCAACTTGCCTTGTCAAGTCGTAGGAAGTTAGTCCATCTTCTCCTGAAGAATGAATTATAAAATATGACTTGGTCCAATTGTCATAAAATGTAAACTGAATCACTTCTGGAGGTCATCACAAAGCCTCACAGGCAGAAATGCCCTACTGAAAGCCAAAGGTGTGGTTACTGTCTTAACGCAAAGATTTCCTCCTCAGAATGGGAAGAAATTTTGCAGGCTTAAAGTTCCACTGGAACAAACTTAAAGTCTGCACAGCTCTTGCAGGCAGCCTAAACATTTTCCAACAATGATCTTTTTTTAATTCAACAG
Seq C2 exon
CCACTAGGAATCCTGTCTATCCTTGAAGAAGAATGTATGTTCCCAAAAGCTACAGATATGACGTTCAAAGCCAAACTTTACGACAACCATCTTGGCAAGTCACCTAACTTGCAGAAGCCCAGGCCTGATAAGAAAAGGAAATATGAAGCTCACTTTGAACTTATTCATTATGCTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.150
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(8.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACAGCTTTGAGCAACTCTG
R:
TGAGCCAGCATAATGAATAAGTTCAA
Band lengths:
351-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]