GgaINT0120297 @ galGal4
Intron Retention
Gene
ENSGALG00000013007 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:HGNC:20202]
Coordinates
chr1:61130635-61131709:-
Coord C1 exon
chr1:61131665-61131709
Coord A exon
chr1:61130698-61131664
Coord C2 exon
chr1:61130635-61130697
Length
967 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
CTTCTCTTTCATCTCCGCAGGTT
3' ss Score
12.88
Exon sequences
Seq C1 exon
TGCAGTGCCTTTGATGGTGCCTGTCCACTCAGCTGTCAGGACGAC
Seq A exon
GTAAGTTGCCCAGATTTCCTCTCCTTATCTGTAGTGGGAACTACTGATGGCCATGGAGCTCTTTGTCCCTCCAGAAATCAGGTGCTGCCTGCCTCACTACCTCACAAGAGGTTGCACAGCTAGGGTAGGACAGCTTAGATATTCCCCTAGCTTAGATATTCTCCTAGTAGTGACATCAACTGTGAAATGTCAGCCCTGCCCACGGCAAGGGGTTGGAACTAGATGATCTTTAAGGTCCATTCCAAGCTAGGCCATGCTATGATTCTATGCCAGCTGAGCCCACCAGGGACATGTGGTCTCCAACCAGTCTATCCCTGCTAAGGCAATCCTACCAGTGTCACCAGCCTGCCAGTGAGAGAGGCTAGCAGCGTGACATGTGCCGGACAGCCCTCTTTGCATTTATGCCACTGCTCTGCACATCTCAGGCATATTGAAGACAAGATATTGTGCCCTGGAGAGTGGAATCACCACAGTTATCCTCCCGTGTTCATCTAGCGCCATGATTTTTCCATGCAACCTGCAGATTTTCATCTGAGCTCCGCGCCTCCATTTCCTGCTTTGCAAAATAAAAAATGATAAAAGCATAAAAAATGATAAAAAATGACAAAAACAGGGACTCAGTGGGGAGGGAAGGGTTATTTAAGTGGTTATAAATGTATGAATTCTGGAGATGGAAAACAGTAGAAGAGGGATACCCTCCAAATATCCTGTCAATGCCTACAGGATGTATCATCTCTTTAAACATGCTTCAAACCGTGTTAGCCCTACATACAGCCATAGCAAGACAGCATCTCTGTCACAAGCTGAATACCTCAAAGAGAGGACGCAGAGGGAAGTCAGTGCTCCGAAGCCTGTGTTAGCTGTGTGACGGGGCAAGGCATGGCAGCGTTGGGGCTGAGCCCACACACTTCACTGTGGAAGCCAACACAGCACTGTCTCTGATGTCACTTCTCTTTCATCTCCGCAG
Seq C2 exon
GTTCTGAATTGCTTTCTCATTGATAATAATGGCTTTATCCTCGTTTCCAAAAGACCTCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013007:ENSGALT00000037501:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]