GgaINT0120674 @ galGal4
Intron Retention
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12507824-12511291:+
Coord C1 exon
chr1:12507824-12507901
Coord A exon
chr1:12507902-12511213
Coord C2 exon
chr1:12511214-12511291
Length
3312 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATATATTTATTTTTCACAGGGT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
Seq A exon
GTAAGATTGACTTGTTAATTTATTCTTACTTTATTTTGGAGAATGACGTTTTGCTTAAAGAGTGACAGAATGCCTTGTGAAACAAACAGCCACCGAAATCTGCAGACAATAAACTGCTGTAGCTGATATTTTAAAGACTGCAGCTGCGTTTGTCTGCAGACTCATCTTTCCTGCTCTAAACTTCCTGCCTGATGCTGAGCTAATGGCTTCAAACCAGTGACTTCATGAGTGGTTATTCGTTGGGTTCCTTACTTCTAGCCAGATTTTTTGACATGCTGAGCACAAACAACATCAATGAAATCTGTGGGAGCTGCAGGTGTGTTGTACTGATGCCATGAGGCATTTGTATGGAAAACAGAACCAGCAGCTCCTAGCTTGAATGTGTGTTTAGAGTTCCAGTTCAGCATGTCATTTTCACAGCAAGTGGTGCAACACAACACCCACTGGTTTTACGAACAGTAGCTGTGTAAGTGGTATTTTAGATCTTAATTTTAAAATCTGCTTTTTTCCTTGAAAATAATAACATTATTCTGATCAGAGCATAAAACTTGTGAATGGCAAGATTTCTTTCTCATTTGATATGTGGAGGAGAGAGGTGAATTATATCTTAAGTGAGAAGCCGCACAGTGTGGGGCAACCATGTTCAAGTGGAAAACATGCTTCTTCTGCTTTAAGTTTTTGCTCTCTTGTGTGAGGAAACTTTCCATGAGTCGGTTGCACTAACATGTTACTTTGCTGCTGGAATGTTGTGGGATTGGGCAAACTGCATTTTTTGGTTCTCGAAGGCATTAACAAATTGGAACAGTCCATTTTATGTGTGACAGTACTCTGCATTATTGCTGCTACTTATCTCCAACAAAGGACTGGCCTCTTCTGGTGTATGTACTTCATGTGTAGCTGAAGGGGCACTGCACTGCTCAGAGTCAGTCATGGCCCTTATTACATCCATATCTGTATCAGGAACAGAGTGAGGATAAATAATGATGCTGACCAGCTGCATCTGAAATGATCTTTGTGAAGTGGAGTTGTTGGTGCAGAGCTGTTTGTAGATTCATGTAAGAATCACCAGTCATGGAAGGGTGTTACAAGACTGCTCCTGAGGTGATGTGTACAAGCAGCAGAATATCAGAGCATTTTGAAGACAAATGATTTTAGTTCTGGAAGCTTCCCTCTTTCACTTGGAGGAGGTGTTGCAGGTGAGGCTATACACTTCACTTGTAGGAGAGATGCAGCAATGTGTCTTGTTGCTATAAGTAGTGATTTAACAAAGCAGCTTTTTCAACTTAACAAATTTGTGATAACAAGGTTACTTGATTATGAACAGAGAATAAAGTCTGACAAAACAGTTAGGAAAACCCTCCTGTTGAGTCTCAAGGTTTAGGATGGACCCTCTGGCCAATTGTTTATGTCTAAAGCATTATATGTTCAAATTTTAGGCCATTACTCTTTGTCCTGTTGCTGTGCACCACTGAGAAGATCCTGCCCATATTCATTTCTCTCCCACCTCCCATTGGATATTTATAAACATTAATTAGATTCCCCCCTCAGTCATCTTTTCCCCAGTCTGAACATACCCAGGTTACTCAGCCAGTCCTCATGAGGGAGATGCTCCAGGCCCTTTGTCATCTTTGTGGTCCTCCACTGAACTTCTTCTAGGAAATCCCTGTCTTTTTTGAACTGGGGAGCCCAGAACTGGACAGAGTACTCCAGATGTGATCTCACCAGGGCCAAGTAGAGGGGGAGAATCACCTCCCATTATATGTGCAATAACTCCTTTATATCACTCAATACTGAATAGCAAGTTAGCAAGCTATTGGCAGATAAGTCTTTCAGTCTTCCAAGATTAAAGTTTCAAGAAGCTGGCTATTACTCATCCAGATCTGTGGCAAGTAAGGAATCTCTCAACCTTGAGGAGTAACCTTGAGAGGCATCCCTGCTCCAGGGGAAGATCCTGGCATGCAGGCGGCTGCTGTGCAAGGATTGCTTAACAAGCTCGGGGCTGTCCCCTGTTCAGGGAGTAAGATGTCTGACTACTGGTCCTATCTGCATATCCGCCATGTGTGGTGAGTGCGTGCTGTCTCCCACAGAGCCACTGTGAGCCTGGTTCAGCAGTCACAACCAGACACGTCCATCGCAGACACTGCTGATGATTGTCGTCTGAGTAGGGTGATGAGTGAAAGGTCAGGTCAGGGAGGGCTGGGGAGAGGATGCTGCCCCCACAGGAGTCCCCTCAGTTTCTTGTTGTAGGGTAAACACAGAAGTGATGCCACAGGTTCTGCAGTTCATGGTATTAGTTTACATGTGTGTTCAGCCTGGCGAGCAACAGAATAGGGCAGTGAAGTATGCTGATTCATTTCAGGCAAACTTCAGTTGATATCTTGTGTGAAAAGCTATTTTTCTTAGATAACCTTTCACCTTCAGCATCAGTGTTGATCTTGGAGATCTCACTTCTTTATTCTTCAGCAGAGCAAAAGCATATTTCTGTGCTATGATCAGGAACAAAAATCTGTCCCCTTGATGATTTGCTAAAGCATGATTCATGTTTTTTCATGGTGGTCCTGTAGACTGTGGACGTATGTTACCTTGAACTTTCATGCAGTATTAAGTAGCGTCCTGATCATGACACCATTCAGTGTTCAGGATGTCACAGCATGGAGATCAGTCATTTTCTCTTTAGCTGTTTTTAATCTCTAACTTTTTTGAGAGACTGAGAAAATGGAAGAGATGTGTGTCATTCCTACTGGATGCCGGTGGAAGTTTGATGCAAGCCTAGAATAAAATACATAGTTGTGCTGATGAAAAGCCCATGCAACCAAGGAGGGTCTGAAATTTGCGTATGTTTAAACAAATCTTGAAGGAAACTGTAGCAATAGAACACAATCGAACTGAAATTTTTTTTAAATCAATTGAAAGGTCACCAAAATGTGAAACTCACCTATTTAAAGTGTTTAGTGGTGGGTTTTTGTTGTTGTTGTTGATGGGTTTTGATTGTTTGTTTGCAGGGGGTGGTATCCTTACACAGGTTTGCTCATGGTTGGGATGCTTCTTTAAGCATGAGCATAGGCTGTGCATTGTGTGGCCAGTTTCCTCACTCCAGAGAACTGTGTTGCGTGGGTGAAGGTCTACTATGAATGCAGCAACACTGTTTAGTATGAAGTAAATCCATCTGTGCAGATAAGCCTGTAAAACGGTCTTAAAATATCACTGTTTGGGTATATAGACACTGCTGAAATTTCGATCTATAAAGTTATATATACTTGGCTTGTAACAGATGGTATTTCTTGTTTCCATTTATATATTTATTTTTCACAG
Seq C2 exon
GGTTTAGCAAAACTTTTACAGCTTCTCTAGAAAGACCAGAAACTCCTCAATTGAAGGAAGTGGCCTTTTTGAATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]