GgaINT0120678 @ galGal4
Intron Retention
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12513609-12514474:+
Coord C1 exon
chr1:12513609-12513678
Coord A exon
chr1:12513679-12514391
Coord C2 exon
chr1:12514392-12514474
Length
713 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TCTTTTTACGTTGCATTCAGCCT
3' ss Score
5.67
Exon sequences
Seq C1 exon
ATTATTTGGTGGATTTCTGAGAACCTATCAACGTGTCATTCCTTTGATCCTATTCAGGAATTTATCATTG
Seq A exon
GTAAGGTATTCCTTTTCCTGCATATTAACTTTTCCTGCATAGCCTAATTATGACTTAAGGAGAAGCCACAATGTCATAAACTGACTCTCTTCCAACTTGTTTGTTATGATCTACATTAGCTGACCTGCATATTGTGGTGTTGGAGGCAATTTTAGTAGTTTAGAAGATATATAGATCCTCTCAAAATGAGAATGGTAGTAGAACTTGTCAAGTTCATTTTTCTGTCTAGTAAGGCAAATAGATTTATCAAAAATTTAAGGTCACTGGAGAGCGAATTCTCCATCTGGCTTATGTCTGATATCTGGGGTGTAAATAACTGGGATTGGAGAGGAGGAACAAATCTCTTCCAGCCCAGCCCAAACCATTTTTTTTCATAAGGATTTGGCATATCATGACATTCTCCTGTAATAGCTGATTTGTCAGCCTATCCAGTATGTATACTGTGTGCCTTGAGCCTGCATACAAAGAACCCCTGCAGTGCTGAGCTGTAGCCAAGCAGCTGACTGGGCCCTGCAGCCATCTGGACTTGCTTTCCTCCTTTTGTGCAGAGAATGGGATGAGTTCCACCATGGAGGAAGCTGTTTCAGAGACAGCAGCAGGATTTGTCCCTAAACAAGTGTTAAATAGATAAGGAACTGACTGTGAAGCCTCTTTTTGATAGCTGGTAGTTCATACAAATCTCACCCTTCTAAATCTTTTTACGTTGCATTCAG
Seq C2 exon
CCTCTCTGTACTGCAGAATGTGTCCAGAAACCAACAACCTGGATAAACTCTTGCCCTACACATCACTGCTTGACTGGACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]