GgaINT0120679 @ galGal3
Intron Retention
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13669879-13670655:+
Coord C1 exon
chr1:13669879-13669961
Coord A exon
chr1:13669962-13670601
Coord C2 exon
chr1:13670602-13670655
Length
640 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CTTATCATTTGTATTGATAGGTT
3' ss Score
7.47
Exon sequences
Seq C1 exon
CCTCTCTGTACTGCAGAATGTGTCCAGAAACCAACAACCTGGATAAACTCTTGCCCTACACATCACTGCTTGACTGGACTGGG
Seq A exon
GTAAGACAACAGCTGGCACTATAATAACTAGAGGAAGTTTGGTTTTTCCTGCTTTAATAAAACCTGTAAATTACTTGTATACATCACCTTTTCTTAGATATGGTCTGAATTCACATCTGTGTTTTATGCACATTTTATGTTGTCAAGTCTTAACCCTAGCGATGTTTTCCATGAATCTTATATTTTGTCAATAAAAACCAGCATTTATAAAATGAGAGGAGCTACCATAATGGAATGGACAATTAAATTTATCAATTTTCATAATAAAATAATAATTTATGGATGATTTTGTTAAGTTTATAATGAATACAAAACATACTTGACCAGGAAAATCCTGAAGTTACTTCCAAGACAACCAGCATCACTAGAGTTAAGATTGATAACTTCAGGCAAGAGCAAATGACAGAACAAATAGAAAACTTGATTTTTTTTTTTTGTCTATAACTGTTCTAGTTTTACCTTTTTCTAGATGGGATGAATGAGACATATCTTCCTTTCTTCTTTTTGGCAAAACTGAATGTACAGTTTTAGCTAACTAGATGATTTTGCGAAGGAAACAAGTAATGGATATTCACTTGTATACCCATACAGGTGCATGTATTGTGTGAAATTATTTATATCTTATCATTTGTATTGATAG
Seq C2 exon
GTTATCCCTGGAGTAGCATGTGCAACAGACATTATTTCTCTACCTGTGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]