GgaINT0120685 @ galGal3
Intron Retention
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13678660-13682838:+
Coord C1 exon
chr1:13678660-13678755
Coord A exon
chr1:13678756-13682767
Coord C2 exon
chr1:13682768-13682838
Length
4012 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
TTTTTGTTTGTTTGTTTTAGCTG
3' ss Score
10.54
Exon sequences
Seq C1 exon
ATGGTTGCTCAGCTAAAGGATCATCTTATGAGACATCTGCAGTATGTAGGAAAAAAGAAGATTGACCAAATAGTGCTGGATTATGTTGCAAACCTG
Seq A exon
GTTAGTTTTATTTCGCTGCTATTGATGTGAGCAAACGTGTATTGTTGGGTGGGGATGTGTGGTGTTGGATATGTGCTGTGTGTGTATCTTGCATGTTTTAGTGGGAGGGGGTTGTTTCTTAGATGCTAAAACATAGTTTTTTGCTCAGTAATGTGTATATTGATAAAGTAAATAATACTTAAAATTTAAAAAGAGTTGTTTTGGACTCTCAGAATACAAAAGAAAATTTCCTTTACAGCTTGTAGAAATATGGTCTGCTCCTGGAAGTGAAAATCTGAACTCATCCTGAAAGCTGGAAGAATGGTCTTTGGATTCTTTTTGATTCCTATGCAATACTTTGCATAATTTAAGTAATAAAAATGTGATTGGGGAAACAAATTAAGAAAAAAAATCACTCTAATATGAAAGGAGAGTTAATTATTGCTGTTCCTGCCTACTGACTTCATTAGGTTTTTTGTGTAACAGATGTAGTTTTGCGTGAATCCGTATGAACTACGTTGAAAACTTACTTTCCAGATTCTGTTTTTCATTATCTTAAGAGAAACTTAAGGAAAAAGCTGTAAAAACTGTCGTGCATGGAAATTATCATACCTGTTTTTATCTGTCTCAGCATCAAATCCTTTAAGTACGGAATGCAGAATCCATAAGAGTTCACATGGCAGCAGGGAAATCACGTTCTTTGTCTTTTTGCTAGTCCTGTCACCAGATTCAGAATTTAATCCATGCAGCTCAGGAAACTTTCAGGATGCTGTGGTGCCTGCATCTTTTGTGAAGTCCTTTGCAGATCAGTTATGCTGTGAAGGTTACAATGTTCTCTGAGCCGCAGCAACTTCTGCTGGGGTTACTGCCTTTTTTTATTCAGGCCTTGCTCTAGAGTTTCACAATCACCAGAGTATATTTTCCCTGTCTTTATAGGGAAAAAAGAAAAACCTAGTGGCTGATGAAAATAGGAACAGGACAGCATGAACAAAAGCTTCATAGCTGATAGCGGTGCTGAAAGAAGCAGAACTGGAATGCTCGTTCTCCTTTCATTTGGTTTTCTGTTATCATTTGTTTATTATTTATCTGAAGTAAAACAAAAAGCAAAATCTACTAAAACACTTTAACAACCTTGATCTGCAAGACAAAATTATTGTAGACTGAATCTTATAGTCAAAACAAATCTCAGCCCTTCACACCCCACCATCAGTGAAATCTTAGGATTCATATTTTTTCTTTTCTTTTAAATTTCTCTTAAGGCAAGATTCTTTCATTTCCATTATAGACTTCTTATTCTTAGAGAAACTGCTATGAACAAAGATCATATGTCTCTCAAAATTACTCCTGGTCTTCGGTGGGTACGTGTTGCTGGGTGCTCTTTTGACATCTTTAAAAATCATTTAATTGTTAGGCTTGGGTTTCCTTTCACCCAAGGGTGAAACTATATCCCACCTGTTGGGAAGTTCTTTTGGGAAATTGATTTTGATTCTTTCAAGTTTTCCATAACCTCAGCAGTGTGTAGCTGAGCTAATGAAGCAGGAAGAGATGTGAAAAAAGATATACTCATCTATTTGCTTTCTCCAAGGAATCGTAATGATCAGAGAGCCTACTGACACAGGGAAGAAATGGATCAGGATGAACTGTTGAGATGTCTCTGTAAGTCTTTGCAGTGGGTGTACCTCTTTAGTAGATAACCAGCCACAGACATCAGATGTGTTCTCAACTGCAGACGAATAATAGGAAGACACCATTTGAATTTGACTGTTCTGAGAAGGCCTTCTGCTTTGTATCCCCTTCCCAGGAAGGGAATCTAGAAATCAGCGAGACCTTATCTTACTCTCTTTTCTCCTCTGCTCCTGATGTTTCTCTTTTAGTCACTCCCATGTATTTTCTGTAGAAACAGCCATAAGAGTTGAAGATTTGTTTTTTCCAAATGACTTCAATGAAACTTCATGCAGCACCTTTACTTGAAAATGTAAATGTTCAAGATAGCAATGTACTCTGCAAATGTCAGCTTAGAGCCTGCTGCGTGCCCAGTCTCACTGTTGATCATGGTTTCTCGTGCTAGTTTTGAGTAGTCAAAGGGAAATGGCCTCTGATACTTGCCTGGAAAAAAACTCATGTTGTACCTCCTTACTGAGTGAAAAATGGTTTTGCCTCAAAGGCTTTGGTTTAGCTTCATTTTGTTCCTCCAGAGACCTGCTGCTGGCTCTCAGCAGGAGGCTGCCTGCATTCCTTCTCTAAAACAGACAATGTTTCCTTTCTTGTTTGTACCTTATTTTGTGGGTAGTATGCTGAAAACTGTTCAGGATATGCCTTCTTGTTCTCTGTGGTGTCAATTGTGGCTTATTCCTGTGAGCTGTGCTCTTGGTGAGGTGGTCATGTCACAAGTTATTAGTATTTAAGATTTAAGCAAGTTGTAATAAGTAGGTTGACTATGATTTTAAAAGATACTTTCTTTCTGTACTCTGCAAAAGCTACGTGATTGGCTGTGTTCTAAAGCAAACAGTGAAAATAATTTGTTACACAAATAATAAGAAGTGAGTCTGGTGTTTAAGAAGCTTTCCTTCCACCTCAGATGCTTATCTTCAGATCCACTTGGAACTCCAGCAGAGGCCTTTGCTGTACGCTGTGCTGGCTGGAGAGGGAAGTCATTTTGGCAGCAGGTGTGGTTCTTGTGACCCTTCTCCGAAAAGTGGAAATCACTTATTTCTTGAAAGATGAGAGGAGAGAACCTGCTGTTTTCCAGGGATATTAAATGGAAGCTTTCCATGGCGTCCAGAAACTGAGTATGGAAATTATCAGGTGGTTGTTCTAAGGCAGCCACATCTGTCTGCTGTGCAAGGCTGGATGAAGTTCTGAAGGGTGGAGAGAAAAGGTGCTAAGTTTTCTGGCCAGTGCTGCAGAGGAGAGCACTTGAGAGTGGTAGTGAAGAGCAGTGTTCCTATTGTGACTTTTCCATACTGATTTCTCTTGTCTGTCTGTTCACCATGTTGCTCAGAGCCTGTGACAAGTTAGAAGCTAGAAGGGGGGGGAAGAAAAAAAAATGGTCTTTTTTTCTCCTTCTAGAGGAAAAAAAAAGAATGGGAAAAAGGATTCCTGGATTCTGGCCATCTTGAAGGAGGAAGGTTTGTTACTTCTTGTGACACCTGTCTGCAAAACAGGGATCAGCCTTGTTTCCTGAGAGTTTCCTGGGGTTGATTAATAGCACTTTGAGGCCCAGAGATAAAAGGCGTAGAGGAAGTGTCTTAGTTGTGTTAGAGAGATGTGGAAGTCATTACATATGACAGCCATAAGGGGCTGGCTAGAGGAAATTATTTCAACTCTTCTATGCGTGGTTTCTTTCTTTCAGCTGCAGAATGCTAGAAAATCCAAGTTTGTAGCTTTTGCATGCTGACATTGCTCTGGAAGCCAGCCTGGGAGCACAGGGATCAACAATGTGGGCCAAGAGATTGTTTTAATTCACTGTAGACAAGAAGGGAACTCAGTAGAGCCAGATAAGCATTTGCTTGTCTCATGTTTCCTCCTCACCCGGGCTAGATTTATGATTCACCCTGTAGACTTTTTTTCAGCAGACTTAATATTCTACCACCTTCAGCAGTATCCAATGCTGTCTGGGCCATAGGAACCTTTCCTTGCTAATTGCTTAGTCAGCTGGACATGTGGTTTTCACTTTCATGGCAAAATGGTCCTTAAGAATTTGATGCAAGAGCCTGAGATCGGTTGATTCCTGAGAAGCACTCAGGATGTCAGATGCTGTATATCTTGCATAATGCTTGGATGAACTGAGAGCACTTACTGTAAACTTCAGGAATGGGGCAATCAGTCACAGCTCAAATGTAACAGTTTACCATTTTAAGCCCCGTAGAAAAATCAAAATATAAATGCTATAAATCAAAATATAAAAGTTTTAGTTGGAGGAGTCCTATGATAAGTTCATAACCTAAACTAGTATGTGAAATAAATGAAAGCTGAGGACCTGCTATATACAGGCTCCTAGAAATGTTTGATCTTTTTTGTTTGTTTGTTTTAG
Seq C2 exon
CTGAATCTGGTACATCGAATAATGAAAGAGGTTTGGAAGATACATCAGCTGCATTCCTGCATCTTCTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312:ENSGALT00000013530:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF042697=DUF440=PD(16.5=46.9),PF149591=GSAP-16=PU(5.2=18.8)
A:
NA
C2:
PF149591=GSAP-16=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]