GgaINT0121124 @ galGal3
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79190627-79193467:+
Coord C1 exon
chr1:79190627-79190744
Coord A exon
chr1:79190745-79193241
Coord C2 exon
chr1:79193242-79193467
Length
2497 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TGCTGTCTACTTCTCTTCAGTCC
3' ss Score
7.33
Exon sequences
Seq C1 exon
CAGGACATCTGATGACATCTACCTATCAGCCCACTATGTTTTCACCTGTTTCTTCACCTGAGGAGAAAGTGCACAAGTATTTCACAAAAACCTGGCTATGGGATTTGTATTCTGTCGG
Seq A exon
GTGAGTAGACTGAGTAGTGGGAGTCTAGTTTGGGTGACCTGGAATGGCAGCAGATACAACCAGATTTAAATCATAAGATACCAAGGAAGACACCAAAGGACATACATTATGGGTTTCATACCTACCAGATTGTTTCTTGTTGGAGCTGATGTCTGCATCAAATATATTTTCCTGTACTAGATGACCATGCAGAGAAAGTATCCATCCAAAGGAGGTGGCTGGCATGAAAATAGAACAAAGTAGGCATGATGTGTTGAAGCAGCTTGTTTTCTTTTCTGCAGTCTGCTTGTGCTGGCTCTGTGAACCAGCAATTCACAAAGTAGGCTCATGGGATGTATCCTGGGATAAAGGAGAAGCTGATCTCCACAGAAGCCCTCCACAGGACTTGGGACTGTGTCCTGTGAGAAAGGCTGAAGATTCAGTGAGTGTGCAGGTAGCCTCACCAACACAAACGAGGGAGAGAAAGTGTTTGGGTCTGGATTGAGTGTGAGATGGGGGACTGAACAGGCAAACACTATATGAATTCCAGATGCTCTGGTGAAGAAATTTCTACTCCGCATCTGTACTGTCCTTCCTTCATGATGCTCCCTATGCTTCCAGGACTCCCCATGGACCAGAAAACAAATTAGTGTTTTCCAGACAGGAAGAGGCAGCAGAATGGTGGTGTGGGAAGCCATTTTCCACCGAGCTTCAGAAGAACGGGATAAGCTTTTGAAGATTTTTCTTCTCTGGACTTCAGAACTGTTTGATGTCTAGAGACTGGCATCTGCTTAGGCCAGATCCCTCCCCCCTCAGCCTCTGCCATCTCTCACCTGCCATCTCTTTCGAGCTATATCCATCTTTTACTTATTATCAGCAGATATTTCCTATGTGATTTGCTCACTAGTCTGATCTGAGCAACCAAAGTTCTCTCTATTGTATATGCCTGGCAAAAGTGGATTCTTTAGAGGAAAGCTAATGTTTCCAATTACTGGAGTCAAATAATATAATAAGCTTTAATGTGGGATGTTTTTTTTTCTGCGTGGGAGCAGCCACAGAGTACTCTGATGCCCTTAGAAGTTGTGATGTGAGCACAGGCCAAGTCTCTGCCATGTCTTTCCATTAGATTTCAAGATGTCAGTGTTTCATGGAAAGGTGAATGGCAAAATTTGTTTCTTTTGATAAGTTCTGCTTGTCTTGGACCACTCCTGTTGCTCTTCTGGTTCCTGGTTCTCCATCCCCAGGCCAAGAAGAACAGAACTGCTGACAGCTCTAAAGCATTTTCACATGTGCAAAGGGCAAGTGCTGCCTTAGGAAAGTGCTGAGTATGATAATGGTATCTTCCAGCCATATAACCTACTGTCAAAAGTGTTCTGTTGATATAAGCATCTGAGGCAGCAGTTCCTGCCTTTTCTAGGTAAGGTCCACATAAAATACAAAAAAAAAGCTAAAGAAGGGCATTATTTCCATCAGAAACAGTGAATGCCTATAGCAAGATATTCTAGGCTATTTTGGGGACTTACTTCATATTGGTCTGCAAGGAGAGTCTGCTAATGTATGGAAGGTAGTAGCAAGGCAGTAGTGCACTGGATATTAATTCAGAAGCTATTGGTGAAGGCATTGTGAAGTTAGATCAGTGAAGATGAAAGAGAGAAATGCAAAGGGGAGCTTACCTCTCACAAGAGACTTGCATGGGGGACAAAGTTCCCAAAATCAAACACCTGAAATAGATATTTTTAATACCTCTTCCCTCAGCTGCTCATGAATGGTGTACATATTTTGCTCTGAAGTAATGCCTCCTGTTTATTTCCATGGAAATTACAACAGATACAAAGAACACCATAACAGCATTTGATAGATCAAATTCTCTGTTACAAAATGCTATTTTCCAACATAGTCACCACCATTAGCTATGCATTTTTGCCAGCAATGAACAAGAGCCTGCATGCCACCCATAAAAATCTGCACCAGTAATACTGACCCATTGCTACTATTGCCACTGATGAAACACACCACCTACCTCTTCAGTGTGCTCGCATCCACTCTTTGGTCTCCATAAATGTTCAGCAAGTATCAGTGAATGTCAGTGGGTGCATTTTTTTCTGCGTACAGGAGCTCAGTGATAGACCTTTGTTTCATCTGCACTTCCATGTCAGATATCATTTTGCCAGACTGCAGCAATCTATGGCAGCAAAATGTAATGGAATATTGGTCAGAAAGTTCAGCCTCTACTGCCATACCACCACCATCTGCCTCTGACATTGTGGGCCACCATAATAAAGTATGAGGCATTACTGTCACAGCAGCCCTCCTTGTATTGGCACGTCTATTTCATCTGAATGATGTGTCCCGTGGCTCTTTGCCTGTACTCCAAGGGCTACAAATTCAGCAGATGTCAGCTGTTAGACTGAGGTCAGGGAATGGAGTGTACTGGGGACAAGGGCATAGACTAGGTCATCTGTCGCTCTGTACAACAAAATTCTACTAAATGCTTCTATTGCTGTCTACTTCTCTTCAG
Seq C2 exon
TCCCAGTGGAAAACAGACTGTCACTGTCACTGTACCTAACACCATCACAGGATGGAAAGCTGGGATGTTCTGCACAGGACATAATGGCTTCGGACTTGCTCCAACCTCCAGTCTGCTTGTTTTCAAGCCCTTTTCTGTGGAGCTCACACTTCCGTCTTCTGTGATCCAGGGTGAGACCTTCATCTTGAAGGCCACAGTCCTCAGCTACCTGCAACAATGTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000023052:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(10.0=22.5)
A:
NA
C2:
PF0020717=A2M=PD(35.6=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]