GgaINT0121125 @ galGal4
Intron Retention
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75550869-75551264:+
Coord C1 exon
chr1:75550869-75551094
Coord A exon
chr1:75551095-75551228
Coord C2 exon
chr1:75551229-75551264
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CATCCCTGCTGCTCCCTTAGATC
3' ss Score
8.77
Exon sequences
Seq C1 exon
TCCCAGTGGAAAACAGACTGTCACTGTCACTGTACCTAACACCATCACAGGATGGAAAGCTGGGATGTTCTGCACAGGACATAATGGCTTCGGACTTGCTCCAACCTCCAGTCTGCTTGTTTTCAAGCCCTTTTCTGTGGAGCTCACACTTCCGTCTTCTGTGATCCAGGGTGAGACCTTCATCTTGAAGGCCACAGTCCTCAGCTACCTGCAACAATGTATGAAG
Seq A exon
GTAGGTGAGCCCTGATGGTCTTCGTAAGAAAAATGGGGTATGGTTAGGTAAGAGATGGCTGAAGCCCCTGCCTTATCTTAGAAAATATGTGACATTTGTCTTGTTACCGTCTGTCATCCCTGCTGCTCCCTTAG
Seq C2 exon
ATCCAAGTGACTATGGAGGAGTTCCCACAGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254:ENSGALT00000037222:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.3=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTGTCACTGTCACTGT
R:
TGGAACTGTGGGAACTCCTCC
Band lengths:
249-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]