GgaINT0122237 @ galGal3
Intron Retention
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69995794-69996862:-
Coord C1 exon
chr1:69996677-69996862
Coord A exon
chr1:69996046-69996676
Coord C2 exon
chr1:69995794-69996045
Length
631 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGCTATTATTCTTACTTAAGGTA
3' ss Score
5.78
Exon sequences
Seq C1 exon
GCTAATTTCAACACAAATGGACAATCCCTTAGAATGCCCAGTCATCTCAGATGACATTGATGAAGAGGAAGTGTGGCTTTACTGGATTGACAGTAACAAGGAACCTCATGGCAAAGCCATCAGACACCTGGCTCAGGAGGCAAAGGAGGGCACGAAAGTTGATTTAGAAGTTCTTACCTACTACAG
Seq A exon
GTAAAACTGCTTATGCAAATAGATGAAAATGTAAGCTCTCCCTGGAGCCTGGCACAGTTCTTACCCACTCCATTTGCCAATATCGAAAAAGGAAAGCAAATCATACCAGAAACAGGGATTAAAAGTTTGTTTCAGATTTTTCCTTTACGAAGCATCACAATCTGTTGTCTATTCCAGACATGCACTGAGTTTTCTTTGTTTGTGACAGCTTTTTGTGTCTAATTTTTCCCCTTACCTTTTATTCATGAAGCTATTTTTTTCATGCTTTGCTGTTCTGGGAAGCAAGGCATACACTGAAGAAGGAGTGTTCACAACATCCTAGAGTACAGAAAGAAGATGGGATCATGGAACAGTGTCTTATACTAATTGAAAACAAACTGTTTAAATGGTTCAGCCTTCCATTGAGCAATACTTCGACTTTCAAAGGGAGCCCAGTCTTAATGGGGACTGGAGCCTGACATTAACATTTTCAACGGCAAGTTTGTTCCTTGGTTAGCAAAACCACACTTTAATCATTTTTACTGTTTACAACAGAAGAGCTGACATCACAATTGTGAAGTGAGATTCTGAGGTTCATTGTATTCAATATTCAAATAAATCAGTTGGAAATGTGCTATTATTCTTACTTAAG
Seq C2 exon
GTACCAACTGAACCTCTTTGCAAGAATGTGCCTGGACCGCCAGTATCTAGCCATCAACCAGATTTCTGCACAGCTATCAGTAGACTTGATCCTGCGATGCATGTCTGATGAAAGCCTACCTTATGACCTCCGGGCTTCTTTTTGCCGGTTGATGCTACACATGCACGTGGACAGAGATCCTCAGGAGTCAGTGGTACCTGTCAGATACGCCAGATTGTGGACTGAAATTCCTACCAAGATCACAATTCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071:ENSGALT00000022784:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(3.8=12.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAATCCCTTAGAATGCCCA
R:
CCTGAGGATCTCTGTCCACGT
Band lengths:
353-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]