GgaINT0123159 @ galGal4
Intron Retention
Gene
ENSGALG00000006706 | USP6NL
Description
USP6 N-terminal-like protein [Source:RefSeq peptide;Acc:NP_001026011]
Coordinates
chr1:5917967-5919934:-
Coord C1 exon
chr1:5919886-5919934
Coord A exon
chr1:5918088-5919885
Coord C2 exon
chr1:5917967-5918087
Length
1798 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
TTTCACTGTGTAATTTTCAGGAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GCAACAATCTTTATTCCACGTTTTAGCTGCATATTCCATATATAATACG
Seq A exon
GTAAGTGGTGTACTTTCATGTTCAGTTTCTCTGGATGTGCTGTAACTTTATTTGCAATTCTGCATCCTCTTCCTCCTTCCCCCCAAAACCACAACACATTTCAGAGACTTTTGGAAATGCAGAGGGATAAATGATTTGTCTGCTGACATGTTTTCAGCTACTGAAGTTGAAACAAAGAATCTTGATGAGGAATGTCTTAGCAGACAGACTGCACAGTACATGGAGTTTAACTGAGATTAAGTATAGTCTTCAATAAGAATAATGAATTTGTGCTGTGCTGGAGTTTCACACTACTGCTATTTCTTCCCATTATATTACTTGCCTCCAATTAAGATCATTTAAATGATGGGAGGAGAAACTACAGAGAGGTGCATGTAGGAGTAAGCAGACATTTCATAGTTCTAACAAATAGAAGGATTTGAATGCTCCAGTGTATATGTTAAAGTACATTCTGGTACTAAATTTGGTCTTGACTGCAGTTCTGAATGAGGATTTTTTGAAGTAGACTTTCTGGACAAATCATAAGGGTTAGGGGCTTACTTATTTTGTAATGTCCTTTGACTGCATGTTAAAAATAGAGAAATGCTATTACGTCCAGATTTAATTTTGTTTTATGCTCTATTCCCTTGTTCACTGTGCCTGTTCTGATCACTTTGGAACAGCTTTCATTTTCCATCCATCAGCAACTCCTTACAATTCAATGTGAAAATATCCAAAGTTGTGAGTAGGAGCGGAATTGAGCAGTTATTCTACTTAAGTATCACTTCATTTCAATGTTCAGAGTTCTAAGAAATGTGGCTTTTATTTCCAGTTCTGATCCACTCATATTTATTTAGCCCATAAATGAAGTTACACTGCTAGGCATTTGTCACCTTTCATTTCCTGTGTTGTCTTAAGCTTTTTGTTGGTAGTGTAAGTGCTGAGAAAACTCTGGAAGGAAGGATCTCCTTTATATATTTTTTGTGCAGCATTAGACTAATGTCTGCCAGCTGTATGATGAAAAGTATTGTTTAAAGTCAACTGTTACAATACAGATGAAGGGAATACTGCAGTGAGTTTTTAATTTGCCTTAATGTTATTGTATTTTTCTTCTTAATGTGTCGCAGTTCTTATGCTTTGTTTTTATCTCTGGAACAAAGTTCTTAAAAAGAACTTTTAAATCTGAAAAAGATTATTCAACTATTAATTCATTCTCCTAAATATTTTATCAACAGACTTACCTGAGCAGTGAAATGATAGTGACAATTGGTTCCTGCCATAAAAGTCAATAGCAGAGGAGTTGCTGAAATTTAGCATTGGAACAGGACTTTTTTTTCCCTTCATGTTTAACTACGTCTGCCTTCTGTGTGCTGCTAAACTTGAACAGGATTATAGTTTCAGGTCACTCCTGAAAACTGCCATGTTTATCAGACGGTGCCTTGATTGTAAAACAAGTCAGAAGAATATCTCCCCTCTCTAGACCCAAATGCACCTAAATGGAAAATGCATCCTTTCTGGAATGAGATGTTCTAGTTACTTGAAATTATTAGTATTAAACCTGATTTAGTGCATTGGTAGAGAGTTCTGGTGAGAGTTCGTGGTTATTTTTCAAATGAATTGTTGAGCATCATCACTTCAATCTATCAGTATTTTAGATATTCAGAATTCAGATGCTTGTGGTGGTGCCATAATTAGGGAATGCTGCATGCCATCAAGAGAGGAAGCCTCTTTGCTATGCTAGCTCAAAAAAAGCTAAAAGCTCATGGGTGTGGGGCTTCTGCTTTTGGGATTTTAATATTTTTCACTGTGTAATTTTCAG
Seq C2 exon
GAAGTTGGATACTGTCAGGGAATGAGCCAGATCACAGCTTTACTCCTAATGTACATGAATGAAGAAGATGCCTTCTGGGCCTTGGTGAAACTTCTCTCGGGTCCAAAGCATGCTATGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006706:ENSGALT00000010845:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(7.6=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]