GgaINT0123418 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16:385503-385976:+
Coord C1 exon
chr16:385503-385782
Coord A exon
chr16:385783-385865
Coord C2 exon
chr16:385866-385976
Length
83 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TCCTCTTCCTGTCCCTGCAGAGC
3' ss Score
12.83
Exon sequences
Seq C1 exon
GAGCCCAAGGTGAGGATCTCTGCGCTGCAGTCGGGCTCCCTGCCCCAAACCGACCGGCTGGCTTGCTACGTGACGGGCTTCTACCCGCCGGAGATCGAGGTGAAGTGGTTCCAGAACGGGCAGGAGGAGACAGAGCGCGTGGTGTCCACGGACGTGATCCAGAACGGGGATTGGACGTACCAGGTGCTGGTGGTGCTGGAGACCAGCCCACGGCACGGGGACAGCTATGTGTGCCAGGTGGAGCACACCAGCCTGCAGCAGCCCATCACCCAGCGCTGGG
Seq A exon
GTAAGGCCCCCAGCCCCTGTCCAGCTGTGGGAGGAGTGGGAGCGTGGCCTTCAGAACCCGAGCTCCTCTTCCTGTCCCTGCAG
Seq C2 exon
AGCCCCCGGGGGATGTGAGCAGGAGCAAGCTGCTGATGGGCGTCGGGGGCTTTGTGCTGGGGCTCGTCTACCTTGCACTGGGGATCTTCTTCTTCCTGTGCAGTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005562:ENSGALT00000041142:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=88.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGGGACAGCTATGTGTG
R:
GCACAGGAAGAAGAAGATCCCC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]