GgaINT0123424 @ galGal4
Intron Retention
Gene
ENSGALG00000000141 | BLB1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSZ6]
Coordinates
chr16:102516-103153:+
Coord C1 exon
chr16:102516-102785
Coord A exon
chr16:102786-102871
Coord C2 exon
chr16:102872-103153
Length
86 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCTCCCCCCGTGCCCCGCAGTGG
3' ss Score
7.87
Exon sequences
Seq C1 exon
CGTTCTTCCAGTGGACTTTTAAAGCAGAGTGCCACTACCTGAACGGCACCGAGCGGGTGAGGTATCTGGTCAGGTATGTCTACAACCGGCAGGAGTACGCGCACTTCGACAGCGACGTGGGGAAACACGTGGCCGATACACCGCTGGGTGAGCCGCAAGCTGAATACTGGAACAGCAACGCCGAGATTCTGGAGAACCGAATGAATGAAGTGGACACGTACTGCCGGCACAACTACGGGGTTGTGGAGTCCTTCACGGTGCAGAGGAGCG
Seq A exon
GTGAGTGCCGCGGGGCGCAGCGCGGACGGACGGGCAGGCGCCGCGCTCTGGCGGTCGGTCCGCAGCGCTCCCCCCGTGCCCCGCAG
Seq C2 exon
TGGAGCCCAAGGTGAGGGTCTCGGCGCTGCAGTCGGGCTCCCTGCCCGAAACCGACCGTCTGGCGTGCTACGTGACGGGCTTCTACCCGCCGGAGATCGAGGTGAAGTGGTTCCTGAACGGGCGGGAGGAGACGGAGCGCGTGGTGTCCACGGACGTGATGCAGAACGGGGACTGGACGTACCAGGTGCTGGTGGTGCTGGAGACCGTCCCGCGGCGCGGGGACAGCTACGTGTGCCGGGTGGAGCACGCCAGCCTGCGGCAGCCCATCAGCCAGGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000141:ENSGALT00000008925:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0096914=MHC_II_beta=WD(100=82.4)
A:
NA
C2:
PF0765410=C1-set=WD(100=87.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGTGGACACGTACTGCC
R:
TCAGGAACCACTTCACCTCGA
Band lengths:
183-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]