GgaINT0123587 @ galGal4
Intron Retention
Gene
ENSGALG00000026646 | C4
Description
complement 4 precursor [Source:RefSeq peptide;Acc:NP_001070701]
Coordinates
chr16:51197-51945:-
Coord C1 exon
chr16:51806-51945
Coord A exon
chr16:51398-51805
Coord C2 exon
chr16:51197-51397
Length
408 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
TGACAGTGACGGTGATGCAGGTG
3' ss Score
1.81
Exon sequences
Seq C1 exon
GGCTGTGCGTGGCGGAGCCGCAGCAGGTGACGGTGACACAGGACGTGCGTGTGGCGCTTCGGCTGCCCCCCAGCATCCGGCCCCTAGAGCAGCTGCAGCTGCAGCCCCTCATCCACAGCAGACTGCCCCGCAGCATCAAC
Seq A exon
GTAAGCCCTATAGAGACCCCATAGGCATCCCAGAGATACCTCTTTCCCTCTAATAAATACCACTTTGCTTCCAATAGATAACCCTCCTGCCCCATAGGTACCCCTGTGCTCCATACTTGCCCTGCCACAGCATACATACCCCTTTCCCTCCAACAGATATGCGTTGCCCCATAGATACCTTCTTTCTGCCCTATAGATAACCCCTCATGCCCCACAGATTCCCGTTTCCTTTCAATTGGTACCCCCTGCCCCTCATATATCCCCCTCTACCCCACGGATACCCCCTTAGACACCCGGTACCGCTTCTGCCCCACAGATACCCCCTTCCTACTCCACTGTCCCACAGCCCCCACTGCCCCATGGCCACCCATAGCCTGGTGGCATCGGGTGACAGTGACGGTGATGCAG
Seq C2 exon
GTGACGGTGACACTGTCGGCAGTGGAGGGGGTGTGCGCGGCGCTGGATGGGGTCCCCCAGATGCTGGAGCTGCCCCCGGGGAGGGCAGTGGCTGCACCCCTCACTCTGGTGGCCCTCCACCCTGGGGACATCCCCATCACCATCACCGCCCGCGGGCCATGGGGGCTGGGGGACCGTGTCACCCGAGTCCTGCATGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026646:ENSGALT00000044830:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(51.7=100)
A:
NA
C2:
PF0020717=A2M=PD(4.5=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGTGACGGTGACAC
R:
GACATGCAGGACTCGGGTGA
Band lengths:
318-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]