GgaINT0123653 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16:25375-26310:+
Coord C1 exon
chr16:25375-25676
Coord A exon
chr16:25677-26033
Coord C2 exon
chr16:26034-26310
Length
357 bp
Sequences
Splice sites
5' ss Seq
GTTGTGCTG
5' ss Score
-13.94
3' ss Seq
GTCTTGCAGCTCCGGCACAGAAG
3' ss Score
-1.77
Exon sequences
Seq C1 exon
CAAAACCAAAGGAAGAACTGCCATCCCAACCACGCCTGGGTGAGCTGACGGCCTCCCACGTCAGCCCCGACTCCGTCCAGCTGGAATGGAGCATCCCCGAGGGCTCCTTTGACTCCTTCACGGTGCAGTACAAGGATGCACAAGGCCAGCCACAGGTGGTGCCCGTGGACGGTGGGTTGCGCACAGTGACCGTGCCCGGGCTGTCGCCGTCCCGCCGCTACAAGTTCAACCTGTATGGGGTGTGGGGGCGGAAGCGTCTGGGCCCCATGTCCACTGATGCTGTCACAGGTGAGCATGCTGTT
Seq A exon
GTGCTGCATCCATGTCTTTTGGCTGACGGTTGTGTTGGCATATGGTAGGAATCTTTCAGGCCCACTCCTGGTTACTGTGGTCTTAATAGAGAGGGAAATTCTTTCCTGTTCTTGACGTGGGTAGCCTGGAGAGATGGGAGTATGGAAGATGAGAGGAAGAACGGAATAAGGAATGATTGATAATTATTGCAGAACGGATGGAAGGTTGGATGGATGGGTGGTGCATGGGTACATTGGTGCTTATAGCAGAGCTGGACGGTTGGTTGTACGTTGGTTTGGTTGTTGAAGAGATGAAGAGTTGGATGGGCGTGTGCTTTCACTGTGAATTCCTCCCCCTGTCTTGCAGCTCCGGCACAG
Seq C2 exon
AAGGAACCACCTTCCCAGCCACTCTTGGGTGAGCTGACAGCGTCCCACGTCGGCCCCGACTCCGTCCAGCTGGAATGGAGCGTCCCCGAGGGCTCCTTTGACTCCTTCACGGTGCAGTACAAGGATGCACAAGGCCAGCCACAGGTGGTGCCCGTGGACGGTGGGTTGCGCACAGTGACCGTGCCCGGGCTGTCGCCGTCCCGCCGCTACAAGTTCAACCTGTATGGGGTGTGGGGGCGGAAGCGTCTGGGCCCCATGTCCACTGATGCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000182:ENSGALT00000000238:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.465 A=NA C2=0.505
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=81.2)
A:
NA
C2:
PF0004116=fn3=WD(100=89.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACCTGTATGGGGTGTGGG
R:
GACAGCATCAGTGGACATGGG
Band lengths:
350-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]