GgaINT0123654 @ galGal3
Intron Retention
Description
NA
Coordinates
chr16:26034-27273:+
Coord C1 exon
chr16:26034-26310
Coord A exon
chr16:26311-26979
Coord C2 exon
chr16:26980-27273
Length
669 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTGTGCCTTCTGTGCTGCAGCTG
3' ss Score
9.43
Exon sequences
Seq C1 exon
AAGGAACCACCTTCCCAGCCACTCTTGGGTGAGCTGACAGCGTCCCACGTCGGCCCCGACTCCGTCCAGCTGGAATGGAGCGTCCCCGAGGGCTCCTTTGACTCCTTCACGGTGCAGTACAAGGATGCACAAGGCCAGCCACAGGTGGTGCCCGTGGACGGTGGGTTGCGCACAGTGACCGTGCCCGGGCTGTCGCCGTCCCGCCGCTACAAGTTCAACCTGTATGGGGTGTGGGGGCGGAAGCGTCTGGGCCCCATGTCCACTGATGCTGTCACAG
Seq A exon
GTGAGGGCAGGAATTGGCACCTGGTGGGCTCTGGGTTTGCAGCAGGTAGAAATTTAAACGTGGCCTGCGCTGGGGATCTTGTTTTCCCCTGGCAATGGGAACAGCTGTTGGGTGCCTTTTTTGGGAAGGATCCCTTAATCGCAGCATGAAGTATGAATGGACCAATTGGGTGTGGGTGGAGTGATGGCTGTTGAGATGAGTTGGTGGCTGCTTGAGTAATTGTCTGTTGGAATGGATGGACAGATATGTGAAGGAGTGAAAGGATGGATAAAGTAATTTAGGAATCGGTGGATGAAGAATGGGTAGGTAGACCCTTGGTGAAGTGGTAGAATGGAAGGATTTATGAACAGATATGAGTTAATTCTTGCATCGAAGTAGGTGTAAGTGTCTATTAGCCTGTTGCACTGAACATGCAGTTGCATAGACAAATGAGTGGGGAGAAGTACGGAGTAAATCCCTGCATGAATGGTAGGACAGAAACCTGAATGCCTGGATGCTGGCAGTGTGAAGAATGGCACTTGGGATAGATGGTTCGAGTATGGGGTAGATTAAAAGATGGATGGAAAAGAGGAACAGAGAGAGGGTGATTGGATGAATGGATGGATGGTTGGATGTGACTGATTGACAGGTACCAAGCTTTTTTCCTGCACTGTGCCTTCTGTGCTGCAG
Seq C2 exon
CTGCAGAAGAGACGGAGGAGGAACCACCGTCCCAGCCACGCCTAGGAGAGCTGACGGCATCCCATGTCAGCCCCAACTCCGTCCAGCTGGAATGGAGCATCCCTGAGGGCTCCTTTGACTCCTTCACGGTGCAGTACATAGACGTGCAAGGCCAGCCGCAGGAGCTGCACTTGGATAGTGGGTCGCGCACAGTGACCGTGTCTGGTTTGCTGCCATCCCACCCCTACAAGTTCAACCTTTACGGGGTGTGGGGGCAGACACGTCTGGGCCCCATCTCCACTGACACCATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000182:ENSGALT00000000238:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.505 A=NA C2=0.465
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.2)
A:
NA
C2:
PF0004116=fn3=WD(100=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTCCTTTGACTCCTTCA
R:
TGGCCTTGCACGTCTATGTAC
Band lengths:
343-1012
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]