GgaINT0123657 @ galGal3
Intron Retention
Gene
ENSGALG00000024372 | F1NM79_CHICK
Description
NA
Coordinates
chr16:40830-41204:+
Coord C1 exon
chr16:40830-41102
Coord A exon
chr16:41103-41175
Coord C2 exon
chr16:41176-41204
Length
73 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
AAAGCCCCGCTCTCCCCCAGAGC
3' ss Score
6.19
Exon sequences
Seq C1 exon
AGCGACCCGAGGTGCGAGTGTGGGGGAAGGAGGCCGACGGGATCCTGACCTTGTCCTGCCGCGCTCACGGCTTCTACCCGCGGCCCATCGTTGTCAGCTGGCTGAAGGACGGCGCGGTGCGGGGCCAGGACGCCCAGTCGGGGGGCATCGTGCCCAACGGCGACGGCACGTACCACACCTGGGTCACCATCGATGCGCAGCCGGGGGACGGGGACAAGTACCAGTGCCGCGTGGAGCACGCCAGCCTGCCCCAGCCCGGCCTCTACTCGTGGG
Seq A exon
GTGAGTGAGGGGATGTGGGGCTGGGGGGCTGCGGGCTGCCCCTTCCCCTGCTGAAAGCCCCGCTCTCCCCCAG
Seq C2 exon
AGCCGCCACAGCCCAACCTGTGCCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024372:ENSGALT00000000139:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGCTGAAGGACGG
R:
CACAGGTTGGGCTGTGGC
Band lengths:
201-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]