GgaINT0123731 @ galGal3
Intron Retention
Gene
ENSGALG00000008532 | Q5ZLK9_CHICK
Description
NA
Coordinates
chr17:2302407-2302913:+
Coord C1 exon
chr17:2302407-2302549
Coord A exon
chr17:2302550-2302749
Coord C2 exon
chr17:2302750-2302913
Length
200 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TTCCCCGTTTGTGTTGGCAGACA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGACCGCGGCGGGAGCGGGCCCGGCGGGGCGGCCGGCTGCCATGTACGCGGGGCTGCAGGAGCTGGGGGTGGCCAACGGCGAGGATCTCAAGGAGACGCTGACCAACTGCACGGAGCCGCTGAAGGCCATCGAGCAGTTCCAG
Seq A exon
GTGGGGCGGGTCGCCATGGAGACGGCGGGGCGAGAAGGCCGCGGGTGGCGCCTGTGCTTTGTTTTGGGGTGAGAAGGCCGCGGGTGGCGTCTGTGCTTTGCTCTGTGCTCTTTCGGCCCCCCTTTTTTTTTACTACTGTTTCTTTTAGCAGCCCCTACTGTCACTTGCTCACCGCCCCTGTTCCCCGTTTGTGTTGGCAG
Seq C2 exon
ACAGAAAATGGGGTCCTGCTGCCCTCGCTGCAGTCGGCCCTGCCCTTCCTGGACCTGCACGGCACTCCCCGGCTGGAGTTCCACCAGTCGGTGTTTGACGAGCTGAGGGAGAAGCTGCTGGAGCGGGTCTCGGCCATCGCCTTGGAAGGGAAGGTGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532:ENSGALT00000040215:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACGCGGGGCTGCAG
R:
TCCTCCACCTTCCCTTCCAAG
Band lengths:
263-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]