GgaINT0123732 @ galGal3
Intron Retention
Gene
ENSGALG00000008532 | Q5ZLK9_CHICK
Description
NA
Coordinates
chr17:2302750-2303200:+
Coord C1 exon
chr17:2302750-2302913
Coord A exon
chr17:2302914-2303100
Coord C2 exon
chr17:2303101-2303200
Length
187 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
3' ss Seq
TTGGTTTTATGTGTTTTCAGGTA
3' ss Score
10
Exon sequences
Seq C1 exon
ACAGAAAATGGGGTCCTGCTGCCCTCGCTGCAGTCGGCCCTGCCCTTCCTGGACCTGCACGGCACTCCCCGGCTGGAGTTCCACCAGTCGGTGTTTGACGAGCTGAGGGAGAAGCTGCTGGAGCGGGTCTCGGCCATCGCCTTGGAAGGGAAGGTGGAGGAAAG
Seq A exon
GTCTGTAGGCTCGTTGGTTATTTGCGGTGAGCGGGGGATTTAATGTGAACATTATCTGCAGTGGGCAAGTGGCTTCTGAAAAAGACTTGAGTCTTCTGGAGGCTCAAGTTGTAGTGTTTGAGATGAGCCATTTTTGTCCTTTGCAGTTAAACGGTAGTTGGAGTCTCTTGGTTTTATGTGTTTTCAG
Seq C2 exon
GTACAAGAAGCTGGAAGATCTCCTGGAGAAAAGCTTTTCCTTGGTCAAGATGCCTTCCATACAGCCTGTGGTAATGTGTGTCATGAAGCACTTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532:ENSGALT00000040215:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF062098=COBRA1=PU(3.4=47.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAATGGGGTCCTGCTG
R:
ACACACATTACCACAGGCTGT
Band lengths:
245-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]