GgaINT0123737 @ galGal3
Intron Retention
Gene
ENSGALG00000008532 | Q5ZLK9_CHICK
Description
NA
Coordinates
chr17:2307990-2309155:+
Coord C1 exon
chr17:2307990-2308092
Coord A exon
chr17:2308093-2309059
Coord C2 exon
chr17:2309060-2309155
Length
967 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCCCTCTTAAAAATTCGAGGAA
3' ss Score
3.63
Exon sequences
Seq C1 exon
GGACTTATCGATGATCTTGTGTGATCCCTTTGCCATTAACACCTTAGCCCTGAGTACCATAAGGCACCTGCAGGACCTAGTTGGGCAGGACACCTTACCCAGG
Seq A exon
GTGAGTGTTGCAGCAAGCGTACCTAATGTGACCCTAGTCTTAATTAAATAGCATTCATCAGCAAACAACCGGCAGTGTAGAAGAAGTAGGATTAAGTTTCCAAATGCATTTGCGAGTTGAAATAAGAGAAATGTAGTACTGGCTTCCTGTTTGTATCAAATACCTTAGAGATCTGCAGGAGTGCTGTTTAGAGAGAGGCGTTTTGGAGCAATCTGAATTGACCATGAATTCTTTGTATGGCCCATTCTGTCCTGACAGCTGTATGTGTATGTACACACCTACTTTGTCCTTCCAGCAGTGTACTAAACAGCAGCAGCCTTTATTCCTTGCTGTGATAAATGTGTTGGCTCATTTGACACTGGTCTGCTCTGTTGGCTGCAGTACAGTGCAGTTCCTGCAAGTAGTGTCTGCAGGAGGTGCTTCAGTGGAAAGGGAAGGAGCCCTCCAGACATCTGAACTGTGTGAGGCATTTGCTGTCTTCATCTCTGAGTTGTCAGATTTCATTGTTGGATTAAATAACTTCTTCATGGCAGTTTAAAATTGAAGATTGTTTTGGTTTCAGGGCAGAATATTAAGGAAAAAAACTTGTTCTTATGCACGCTTCCTACTTCTTACTTCTGCTGAGATGATTTGATTCATTCTGTCATGTTATATTTCAGTATCCTAATTTGGTTGGACACCTTCAAAAACAGTGTCCTGCTCAGATTGTCTGCATACTTCTTAGTGTGTTATAGAATGCTTCAGAGAATAGCTCTCAGTTATGTGTTCTTCTTGCAGCTGTTTGATTCCCATTTTAGGAATCAGCTATCAATTAAATTTGAGAACTGAATGCCTCTAGCAGTCTTTGATAGTGCTGTTAGTCCAGGAGGGCTTTGAATGTAAACCACTGCTTCCAGATAAATACCTGTATGTGTAAATTGTGGAAGATCAAACTAGCTGTTTTTTCTCCCCCTCTTAAAAATTCGAG
Seq C2 exon
GAAAGCCCAGATCTGCTGCTGCTCCTTAGGATGCTGTCTTTAGGACAGGGAGCCTGGGACATGATTGACAGTCAAGTCTTCAAGGAACCAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008532:ENSGALT00000040215:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF062098=COBRA1=FE(7.2=100)
A:
NA
C2:
PF062098=COBRA1=FE(6.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTATCGATGATCTTGTGTGA
R:
ATTTTTGGTTCCTTGAAGACTTGACT
Band lengths:
198-1165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]