GgaINT0123813 @ galGal4
Intron Retention
Gene
ENSGALG00000004986 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
Coordinates
chr17:4934932-4935327:-
Coord C1 exon
chr17:4935200-4935327
Coord A exon
chr17:4935136-4935199
Coord C2 exon
chr17:4934932-4935135
Length
64 bp
Sequences
Splice sites
5' ss Seq
CATGTAGGT
5' ss Score
4.94
3' ss Seq
TCTGACCGCTCACCCTGCAGCTA
3' ss Score
9.13
Exon sequences
Seq C1 exon
ATCGTGTCCCAGGGGCTGGAGCGGGTGCTGGTCTTTGAGGACGATGTACGCTTCGAGGTGTCCTTCCCAGCACGGCTGCAGCGGCTGATGGAGGAACTGGAGGAGGCACGGCACGACTGGGACCTCAT
Seq A exon
GTAGGTGCTGGGGATGGGGGGCGCAGGGTGAGCGCTGGACCAGCTCTGACCGCTCACCCTGCAG
Seq C2 exon
CTACCTGGGGAGGAAGCAGGTGAATGCAGAGGATGAAGCTCCTGTGGAGGGTGTCCAGAACCTGGTGGTAGCCGGGTATTCCTACTGGACGCTGGCGTACGCCATCTCCCTCCGTGGCGCCCAGAAGCTGCTGGCTGCCAAGCCCCTCTCCAAAATGCTGCCTGTGGATGAGTTCCTGCCCATCATGTACGACAAGCACCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004986:ENSGALT00000007990:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.7=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=PD(31.9=85.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGTACGCTTCGAGGTGTC
R:
ACAGGAGCTTCATCCTCTGCA
Band lengths:
132-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]