GgaINT0124133 @ galGal3
Intron Retention
Gene
ENSGALG00000001950 | Q5ZJ49_CHICK
Description
NA
Coordinates
chr17:8578430-8578774:-
Coord C1 exon
chr17:8578714-8578774
Coord A exon
chr17:8578633-8578713
Coord C2 exon
chr17:8578430-8578632
Length
81 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CGGCTGTGGCTGTCTCGTAGGTG
3' ss Score
7.74
Exon sequences
Seq C1 exon
ACGGCAAGATGGCGGCCGCCGTGGCGTGGCTGCGGCGCGGCGCGTGGGGCCCGGCCCGGCG
Seq A exon
GTGAGCCTCAGCGGGAGGAGGAGCTCGTTATTCTCGGTAACGGCGGCCCCTCCCCTAACGGCGGCTGTGGCTGTCTCGTAG
Seq C2 exon
GTGCGGGCTGGCGGCCGCCCGGAGCTACAGCGGAGGCGGCTCCTACCCCAACGTGTCTCTGACGTGCCCGCTGCCCGGCGTGCCCAAAGCCGTGTTCGCGGCCGCCGAGGGCCGGGAGCGCTTCGAGACGCGGGTGACGGTGCTGGAGAACGGGCTGCGCGTCGCCTCCCAGAACAAATTCGGGCAGTTCTGCACCGTGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001950:ENSGALT00000003018:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0067515=Peptidase_M16=PU(9.9=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]