GgaINT0124135 @ galGal3
Intron Retention
Gene
ENSGALG00000001950 | Q5ZJ49_CHICK
Description
NA
Coordinates
chr17:8577903-8578350:-
Coord C1 exon
chr17:8578271-8578350
Coord A exon
chr17:8577986-8578270
Coord C2 exon
chr17:8577903-8577985
Length
285 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
CTGATGATCTTCATTCTTAGTCC
3' ss Score
6.73
Exon sequences
Seq C1 exon
TCCTCATCAACTCCGGATCGCGGCACGAAGCGAAGTACCTGAGCGGCATCGCGCACTTCCTGGAGAAGTTGGCGTTCTCC
Seq A exon
GTGAGTAGCGCGGGGTCCCCCAGCCCGGCTGTTGCTGCGTGCAGCGCGAGGGCAGGGCCGGGGAGAGCAGTGGCGGCACGGCTCGGTCTGTACCAATGGCTTCTGATGCTCTCTGAAGTCTGCGGCGCGCCCAGCCCTGAATTCCGTATTTAGCAAACGGTTTGACTTAACGAACTTGAAGGGAGGCCGCGGTGCTGCAGCAGGAGATGCTCAGTCTGGGTTGCACGGAGGGGTTATAAATAGTTGTCACTGCTGCTTTGTGATGCTGATGATCTTCATTCTTAG
Seq C2 exon
TCCACAGCGCAGTTTAGCAGCAAAGATGAAATTCTCCTCACCTTAGAAAAACATGGAGGCATCTGCGACTGCCAGGCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001950:ENSGALT00000003018:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0067515=Peptidase_M16=FE(17.2=100)
A:
NA
C2:
PF0067515=Peptidase_M16=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATCAACTCCGGATCGC
R:
CTTGAAGCCTGGCAGTCGC
Band lengths:
163-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]