GgaINT0124295 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:882516-883229:-
Coord C1 exon
chr17:883159-883229
Coord A exon
chr17:882627-883158
Coord C2 exon
chr17:882516-882626
Length
532 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGCTCCATGTCCTTTTTCAGAGG
3' ss Score
8.88
Exon sequences
Seq C1 exon
CCCAAAGGGGTGCAGAAAATGGGAGACAACCTTCAAGAAGACCAGTGATGATGGTGAAGTCTACTACTCAG
Seq A exon
GTGAGTGGGAACAGAGTCGTGGGCAGAGTCAGAGGCACACTGATTGTGCCTGGGACCTGGGACGCCCCCCACCACTGGCCCTAACTACCCACTCAACACCACTTCATGCTGGGGCCATGCCCCACTAGCAGTGGCTCCTGCTGGGAAGCTGCTTGCAAGAGGACACATGAGCCTAAGTGTGGGCAAAGCAGAGTTGTTCTGCAACAGGGACAAAAGAGCAGTGCTTTCCCCCACCCCCCACTCAAGTGCTAGTCCCAAATTGGCCAGGCTGCTCTGCTGCCCACAGTGGCCACCCCCATTCCCTCCTGCAGTGAAGGTCCCTGTCGCTCTGCTGATCCGTGCCATGATCTGTGGGCTCCCCAGGCTTTTAGAGGAGCCTTACCAAGATGGAAAGTCAGGAGGGGGGATGCAGGAGAAATATGGGCTGGGTGGATCAATGAATGGGCATTCATATGCTTATAGTCCTTTTGCAGCATGGCAGCTCTCAGGGGCATGTAGCAAATTTTTCACTTTGCTCCATGTCCTTTTTCAG
Seq C2 exon
AGGAAGCCGAGAAAACGGTGGAGGTGCTGGACACGGACTACAAGAGCTATGCAGTGATCTTTGCAACCAGGGTGAAGGATGGGAGGACCTTGCACATGATGAGGCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024011:ENSGALT00000040489:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(20.7=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(31.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]