GgaINT0124509 @ galGal3
Intron Retention
Gene
ENSGALG00000003757 | POMT1
Description
NA
Coordinates
chr17:6848045-6848788:+
Coord C1 exon
chr17:6848045-6848122
Coord A exon
chr17:6848123-6848664
Coord C2 exon
chr17:6848665-6848788
Length
542 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GCAGCACTTCTGTTTTGTAGGTA
3' ss Score
5.8
Exon sequences
Seq C1 exon
CGCTGCCCCTGGGGCGTGGAGCTGTGCTCCTGCTCCCCTTCCACCCCCATCGCCTCTGTAAGGCTTGAGGGAGTGGGG
Seq A exon
GTAAGGCCTTGTTCCCTCGAGGCGGGGCTACGAGGCCTAGTGGTGAGGGGGTAGTGGTCCTACCTCACCTCGGAGCGCTCAGGGCGGCCACAAGGCCACTTGCAGGTGGGGTTGGGGGGGACGAGGGAGGGTGGGTTGGGAGTGGAGCCTGGGTGTGGGGCCAGTGGGCCTGCTGTTCCCCATAAATCTCAAGAGGGGAATAGCATGGTGAGGGACATTCAGCATCCTGCTGCACATCTTCAGGCTCCCAGCTGGGCTACAAGGCTGAGGTGTGGTGGCTCCATTCACCTGTATAGGGCTCTGGCAAGTATACAGACATGGTGAGTGGCTGTGATGCGCTCCTGCCTGAGCTTTGTGAGGCGTGGGACTCGTTTCCTTATCGTAGTTCTCTTTGGGGTCCCAGGGCTTGCACTCATCCAGAGACAGAGGAGCAGTGGCAGGGTGTCTCCGGTGCTGATGGAGAGCCTGTCTGTGCAAGGGTCTTCTTACCAAAGTCTGTTCCCCAGGGCAACGTGTAGCTGAGCAGCACTTCTGTTTTGTAG
Seq C2 exon
GTAGCAAGAAACAAGGACGGTGGCACTGCATTTGGTGGTGGTGATGTGCTCGCATCCTGCTTTGCTCACACCTGATGAAAGCCATGCAAAAGAATTTATTCCAGTAGCTTTTGGTGATACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003757:ENSGALT00000005965:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGCTCCTGCTCCC
R:
TCAGTATCACCAAAAGCTACTGGA
Band lengths:
182-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]