GgaINT0124738 @ galGal3
Intron Retention
Gene
ENSGALG00000009079 | MAN1B1
Description
NA
Coordinates
chr17:715244-717851:-
Coord C1 exon
chr17:717731-717851
Coord A exon
chr17:715442-717730
Coord C2 exon
chr17:715244-715441
Length
2289 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
AGAGCTGTCTTGTCCTACAGGAT
3' ss Score
9.05
Exon sequences
Seq C1 exon
ACTGTTGGAGGACTATATGAAAGCCATAGAAGGCGTGAAAAAGCATCTTCTTCAGAGATCACAACCCAAGAAGCTTACCTTTGTAGGAGAGCTTGCTCATGGCCATTTCAGTGCCAAGATG
Seq A exon
GTAAGAGTACACCTGCACAAAGTGACGAAAGCAAGAGCAAAGCTACCACCACACACACACATACACACACACACACACACACACACAAATCAACATGTGCAGGTGTGAGGCTCTCGTGTGTAGCTTTTCAGACAGAATCTGACCTGTAGCAATCACTTCTGAGCAAAGATGTTTCCTCTGGCTTTGTGAGCCACTACTGGAAGATGATTAGCAACAGTTTTGACAGCTTGACATACCTGAGGTGTAAGGAGCACTGCAGAGAGAGTTGGAGAATTGCTGCAGCTCCACCAGGCTTATTGGCCTGTTATCAAAGGCTGCAGGCTGTATGGATGTGTGTAGCAGTAACTAGTTTGAGGATAATGGTCCCCTGGGGGCCTTCTTTTTGACTTACATTTACCTTTCTGAGTTACTCCAGTAACTGCATTTACTTTCATACAAAAGTTAACATTTTGGTGTTGGATTTGAATTCTACCCCAACCCACTCTCCTTTATCATAGAATCCAAGTGTCTGAATCTGCTGCCACAATGTCTGTTTTGTATAATACTTCTTCTTCATAATTTAGAAATACAGAAATTTAAAAATAGACCTGGCTTTTCAGATTAACCTTGAAAACAAGCAGTTGACCTCATCTTGCTCTATTAGTACTAAAAAATGAAAAAATGAGAATTTTGGAGAGTTCTGTCTATTCATGACACTTGTTTCTTTTTCTGCACCTAGGTTCACTAGTTGAAGCTCTATGCCCTTTGCTATTGGGAAAACTTGCTAAGCTTAACTCCCTGCTCTTAATCTACAAAGTCACACTCTTTAAAATGCAGTTTTAAAGTCTTTCAGTTCAAGATCTTATGCAAATACAATCTGTGTTTAGGTTTTTTTTCTTTTTTCATAAGATGAGTGGTGCATTATTGATGTATGTGTGGCCTTCTGTGCACTTTTTCAATACCTGTAGAGAGCTCTAGGGAGCTCTTTGGCTTATTTGTTTTCTTTATAGCGTTCAGCTCTGTTTTGCAGCATGATGTCACTCTCCTGTGTTGATGCTGAACCTCAACCAATACCCATGGAATTGGACAAAGTGTTTAACAGTTCATACCAGTGCTGCTTGAGCACCAGGTCACGTGTACTGTGTTTGAGTGGGAAACCAGGGCTTTCATTTCAAGTGTTAAGAATCATTTAAAATTCTGTACGTGATGATAACCTGATAATAATTCTTACATTCATAATATCGGTGATGCATGACCCCTGGAAAGAGGACAGTCAATCTTGTAGTGCAAATTGAAATTTGCTGACGTCTGGGCACTTTATACAGTGCTGTTTTCCAATGTGTTCATCTGACTTGGGCAGCTGGGAAGACTTTGTTGCTTACAAATGTGGCCCATGTCTTGTGCAGCTAGCATTCCTTTTGTCCTTTGAAGGCACTGTTTGCTGTAGCATGGAAAAACTAAGAAAGGAATGTCCCTTTAGTTCTTTCACTTCTGTTTTATGCTGGGGGAGCAAGCAGGAGGGCTGCGTGCACACTCAGCCCCAGATGCCTCCCTTCTGTGACACACAAGAACCAGACATGCTTTGTTTGCAGTGGCTGGTGCTTGGCATGCAGCTAGCAGTGCAGTGCAGGGGTGGGGATGGGAGTGGGAGCCAGCTGCTTCCTGTGCTAACAAGCATGGTGCTCACCATGCAGGTGAGCATTAAATAACAGACCCCAAATGACAGATGTGCAAGAAGGGGTAAGACTTCAGGCAGAAATACGTTTGAGATCTTGTCCATGTTTTCCAGTTGTATCAGCGCATGGAATGAAGGCGGTTGTGTCTCTGTGAGTGTTGTCTGTGGCGGTAACACTACGGTGATTATTTCAGGCCAGGGACTGCTTCCTCTCAGCTCTCCCCGTTCCTCAAAGCCTTTTCTTGTGGCTGACTCTTCTCAATCTGTGGTCCCACCTCAGTTTTTGTCCTAAAATATTGACATGTATGTCAATACATGTTTTTAGATGTTCTTTACTGACAACCCTTCAGGTGATCAGTGACTCTCCCCTCCCCCCTACCTGCCACCTTTCTTTCAGATAATTGACACAAAAACATGTGGACTTGTACTTTTTCCAGATTTGGGCTGGTACTATCATAATGCTTCTTGTTCTGCACTGCATTACAGCAGATTGTTAAATTTACACTCAAGATCTTGGTACCTGAAATGTCAGGGAGGAAAAAAGTCACAATCTGTTTTCCAGTAGTGTAACTTGAATCCTACTTCACTTGATTTATGTGACATCTTTTCCTAGTAAGAGCTGTCTTGTCCTACAG
Seq C2 exon
GATCACTTGGTTTGTTTTCTGCCTGGGACTTTGGCTCTGGGAGCTCACAATGGATTGACTGCTGATCATATGAAGCTGGCCGAAGCCCTGATAGAAACATGTTACCAGATGTATGCACAAGTAGAGACAGGCCTGAGTCCAGAGATTGTGCACTTCAATCTCCATGCACAAAAGGGCCACAAAGATGTAGAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009079:ENSGALT00000014774:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(9.1=100)
A:
NA
C2:
PF0153215=Glyco_hydro_47=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]