GgaINT0124869 @ galGal4
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7068313-7069658:-
Coord C1 exon
chr17:7069560-7069658
Coord A exon
chr17:7068382-7069559
Coord C2 exon
chr17:7068313-7068381
Length
1178 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTCTCCTTTGCCTCTTGCAGAAC
3' ss Score
11.57
Exon sequences
Seq C1 exon
AAAATGGGCATGACAGAAGATGACAAAAGGAATTGCTGTTTGCTAGAAATCCAGGAGACGGAGGCCAAATACTACAAAACACTTGAAGACATAGAGAAG
Seq A exon
GTAAGCACCCAGCCATCTTTTCAATGCCAAACCCTTCCACCTCGTCACTCCGTCCTGCGTTAGTGGTGCTGTGGTGGTCGTTGCATGGGGGCTGGTTGATGTGACAGAGCAGCATCGATGCTCGCATGTCAAACGGCAGCAGGAGGAGGTGGGAAACCCATCCTAACAAGAGCAAACGTGCAGTCGGAACCAAGCAAAGCGTTTCCTTCTGATTGCTGCGTATTGGAAAGAGACTGAAAAATGCCATATGCTGTCCCCCTACCGTGGGGTATGAGCTCCAGCTGCATGCAGCCGGGCTGCCTTGCTGATAAGAGCCGGGTTGCAGATAGCTTATCGCTCCGATTGCTGCTGTGCGATCCGATGGTTCCTTTCTTCTGGGTGTTTCTCAGAAGTGCTGGAGCTGCGCTGACTTGTCATTGAGACTAATTGGATTAAAAGTAACGTGGTGCTGCTTGAGTTGCTGGCTTTTAATTGGTTTTGATAAATGATGGTTGGGCCTTCCTTTGAAAATCAAATGAATGGAGGAGCTGTGGGTGCTGCCAGAGCCCGGAGGTGATTTTGGCTCTGAGGAAAGTGGCAGGAATGGAGAACAATAGGGGAAATGGAAGTGATGTTTCTCATCATCCCCAATGCTTTTGTTTCCCCCTTTTGTAATGGTTTGCCTCCATCTGCAACCTGAGCGCAATCCAATGACGTTTCCCATTTTCCAAGCAAATATCCTAATGTGTTTAAATAGTGCTTTTTGCTTTGAAAGCAATCGTAAACCTTCTGTTTTGGTTGTGTTACTGCTTTGATATCCTTCACAAAGGCTTGTGGAGGTGTAGCGGGTTCCAATGGCATATTATGGGCTGCGGGGTCCCGTCTACAGAGCATTGCCTCTGGGCTTTTTGTAGTTAAAAGAAATGCAGGTATTTCAGTTAGCATGTATTTGTCCAGAAAGGCATTTCCAATGTCATCTTATCAGCTGCTCTTTTTCAAGGGCAAAACCCTTTTGAGAGATTCAAAGAGCTGAAGAGATAACTCGGAGCTCCACACAGCTGCAGCTGAGCATTGCAGTGTGGTGGAGACTCCATCAGGTTCATCATAAGGCAATTAAAAATAGACACCCCCAACCAAAAAAAAAACAAACCCTCTTATTCACTCTCCTCTTCCAATCCCCTCTCCTTTGCCTCTTGCAG
Seq C2 exon
AACTATATGAACCCACTGAAGCTGGTACTGACCCCGCAAGACATGGAAGCGATCTTCATCAATTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(11.5=60.6)
A:
NA
C2:
PF0062115=RhoGEF=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]