GgaINT0124886 @ galGal4
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7054049-7054338:-
Coord C1 exon
chr17:7054222-7054338
Coord A exon
chr17:7054137-7054221
Coord C2 exon
chr17:7054049-7054136
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GCCTTTGCGTCCCGTCATAGGTT
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTTTGCAGGGAACATGGAGCGGCAGCAGACGGACAACCTGCTGAAGGCCCACGTCAGCGGCACCTACCTGATCCGCGAGCGGCCGGCCGAGGCTGAGCGCTTTGCCATCAGCATCAA
Seq A exon
GTGAGTGCAGCCTTGTAGGGCACACGGAGCATGACCCCACAGCACGAGCATGCCTTTTGCTGAGCGCCTTTGCGTCCCGTCATAG
Seq C2 exon
GTTCAACGAAGAAGTGAAGCACATCAAGGTGGTGGAGAAGGACAACTGGATCCACATCACGGAAGCCAAGAAGTTTGAAAGCTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
NA
C2:
PF0001719=SH2=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGGGAACATGGAGCG
R:
GCTTCCGTGATGTGGATCCAG
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]