GgaINT0124887 @ galGal3
Intron Retention
Gene
ENSGALG00000002699 | VAV2
Description
NA
Coordinates
chr17:7733367-7733666:-
Coord C1 exon
chr17:7733579-7733666
Coord A exon
chr17:7733491-7733578
Coord C2 exon
chr17:7733367-7733490
Length
88 bp
Sequences
Splice sites
5' ss Seq
TTGGTACGT
5' ss Score
8.11
3' ss Seq
TGTCCCCCCGTGCTTTGCAGGAG
3' ss Score
10.69
Exon sequences
Seq C1 exon
GTTCAACGAAGAAGTGAAGCACATCAAGGTGGTGGAGAAGGACAACTGGATCCACATCACGGAAGCCAAGAAGTTTGAAAGCTTGTTG
Seq A exon
GTACGTCCTTGAAGGCCCTTTGGGCACATTGTGGGTCGACGCCGGTCCTGCAGAGCATCTCCCAGCCATGTCCCCCCGTGCTTTGCAG
Seq C2 exon
GAGTTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699:ENSGALT00000004255:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
NA
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACATCAAGGTGGTGGAGA
R:
GTAGAGCGTTCCCGTGACTTG
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]