GgaINT0125009 @ galGal4
Intron Retention
Gene
ENSGALG00000009060 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr17:379462-381756:+
Coord C1 exon
chr17:379462-379508
Coord A exon
chr17:379509-381667
Coord C2 exon
chr17:381668-381756
Length
2159 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTAT
5' ss Score
4.29
3' ss Seq
CTGCTGCCCAGACATGTTAGCAG
3' ss Score
-6.12
Exon sequences
Seq C1 exon
CTTCCCAAAAAGCAGGACCACATTCTGGCAACAGGCCCGAATTCCAG
Seq A exon
GTTTATTCAGCAGCTCAGTGACAGTTATAGCTCAGAATTACTTTTTCCTCTTTTAGCTCCCAATCCCATATGCCTGCTCAGTGATGCTTTGTACCACAGGGGGATTTCCTAGCGCGAGGTGGAGCTGTGGATGCTCCCTCCAGCTGGCTGGGAAGGAGCCTGGCCTCAGCACAGCAAGACCTGTCTCTCAGCTGGCCGAGATGTGCCTGGAGCTGTTGGCTGGGAGCTGCTGGGGGTCCAGTAAGCCTCAGCTCGGTTAGATGGCAGCATTTGGGCTCACGGCTGTTCCAAGGCTCTGGCTGTATGGTGTGGCTCTTGGGAGGACTGTGTCTGAGAGCAGGGAGGTGGTATATCAGTGCTTGTAGGCATCAAAGGCTTTGAGGGAGCTCTCCCTGTCTGTGCTTCTAGGAGGGAGGGCTGCTCACAGGGTGCTGCCCACCTCTGCTTCCCGCCCCACGTCACAGCCATAGCATGGGTGGCAGCCACAGCATCTGCCGGGACAGGGAGGGACAGTGAGGCTGAAAGTAGAGGAGTCACTGTGACAGCTCCCCACTGCTGGCTCTCAGCTTGCCTCTCACAGCAGTGTCCAAGTGTCTCGGCGTTTGGGCTCTTTACCCTTTTGGTTCCCAATGGGAAAGCTTTCCTCCCTTCTGGCAGAGGGGAGATGAAGGTGCTGGGTGGTTATTGCCTTACCCAGAGTGGTGCCCCTGGACACTGCCTGCCCCCAGCACAGCCAAGGTGGCCTGGCTCTAGAAGCTGCCTGGCACCAGCAGGAAGGAGCAGGATGGTTTTGTAGGCAGCTGTTGTTCTACACTTGGCAGTGGCCTGAGCAACAGCTGCCAGGTGTCTGGGAAGTTGTCTGCTGAGGGCTGAGCTTGTGCCCGGCAGGGGGTGCCCGGCAGGGGGTCCCCACTGGCAGGTGGTCCTGTGCCCAAGAGGAGCTGAGCCCAGCTCGTTAGCGTGGGTTCAGTTTTACCACTACATTGATAATCCAGGTGTGCCGAGCTCTGCTCTTTGACCAGGGAGCACCTCCTTATCAGAGGTTGATCCCAAATCAGCCTCTGGGCTCTGTGTTTTTATCATACCCCACAGACTCAGTAGTGGCACTTCAGAGAGTTAAAAAAAAAAAAAAAAAGTTTTAACATTTTTTCCATCCTGCAGCTCTTCCCACAGGTTTCTTCCTGGCTTTGTTTTGGCATTCTGCTTATTGAAGTGACTTGGTTTTGAGACTATCCTTCCACTTCCCTTTCAGGTTGTGCTGCAGGTTCAGGAGAACATGTGCTCAGTTGTGCCAGTCGTGCTGGCTTAGCTGTTCCTCCCAGGTAGATATGGGTGTCTGAAACCAAAGGCATCTGGCAAAACAGATAAGTGAGTGATATCAGACTTTGTGTTAAGTGAGATGCCAGAGACCTGTCTGTGCTGGAGCCCTGGATGGCAAGAGAAGCAGGATGCTGTGATGAACCAGCAGCAGAACTTGTGTGCCACCCTGGTTCCTTTCCAAAGTAGCACAGTAGTGGTTTAAGTGAGGTGAGTGCCCAGCTGCACCGCTGCTGGGATGTTGCTGGCTGCTGCTGTGAGCCCACTGCCACTCCTGTTGCTGAACTGATAGATGCTGGCAGCACAGACACCCTTGCAGTTGTGCAGTTCTCCCATCTCTCTGCCTCTCAGCTCCCTCCTGTGAGCTGGGCTCAGAAGATGAAAGGTGACTCCTGCAGCCTCAGCTCACTTCTCCTGCCCCATATCCTGCACCCTTTGCATCTGTGTGCCCCACTGACAGCCATGTAGACCTCACACCCTGCTCAGTGCTTCTGTCCCTCCTGCCTGCCTGCACTACAGAGCACACTGCGTGTGCCCGGCCGGTTGGAGGAGGGGATCACAATGGGTGGGGGTGCCTGGGAGGTATGGGGGCAGCAGTCCCAGGGAGATGTGTCCTGCAGCTGCCTTGCTACCTGCTTTCCCTTGCCTACCTCCCTGCTACTATTTTCTGGTTCTTGTTTGGATTCCAGGCTAAGAAACTTCAGGAAAGCAAAAAGCTGTGACCAGAGAGCAGAGGGAGCAGCAGGAGGGAGGGGATGAGCACAAGGCAGGCTCTGCTGGACACTCAGCAGGGGCCTGGAGCAAGAAGGGAGTGCAGCACACCTGCTGCCCAGACATGTTAG
Seq C2 exon
CAGAGGGTGCTGGCTGCACCCTGCGTGCCTTGGCGCCGTGGTGCTCAGCAGCAGGGCGGTGCTCTGACAGCATGTCCAGAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060:ENSGALT00000014746:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]