GgaINT0125094 @ galGal4
Intron Retention
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:422938-423536:-
Coord C1 exon
chr17:423395-423536
Coord A exon
chr17:423073-423394
Coord C2 exon
chr17:422938-423072
Length
322 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
CAGCCCTCTGCACCTTGCAGGTG
3' ss Score
7.5
Exon sequences
Seq C1 exon
CATCCTGAAGGAGCTCCTGCAGGTCCAGCAGAGCTTGGGCTACTGCCCCCAGTTTGACGCGCTCTTTGATGAGCTGACAGCCCAGGAGCACCTGGAGCTCTACACGCGCCTGCGTGGCATCCCCTGGAAGGACGAGGAGCGG
Seq A exon
GTAGGGTTTCGGTAGGGCGTTTGGCAGTGCCTGAGGGCTGGTGCTGTGCCACAGTCTGCTCTGGGAACAGCATCTCAGCTATCACTGGTAGACACCAAAGTGGGTGCAGCCCCACTCATGACTGCCTGCTGCTGCCTCAGCAGTGCTCCTGCGGCGTGTCCAGGGCTGCGCATAGGTGCAGGGAGGCCCCGGTGGTGCTCAGAGCTGTGTGAGGGGCTGCCACGGGGCTATTTGCCCATTGCCCTCTGCCTGCTCTTCACATCTTTTGCCCAGGAGTGTTTGGGTCCCCAGGAGGGTGATCACAGCCCTCTGCACCTTGCAG
Seq C2 exon
GTGGTGAAGTGGGCGCTGAAGAAGCTTGAACTGACCAAGTATGCTGACAAGCCTGCCAGCACCTACAGCGGAGGCAACAAGAGGAAGCTGTCCACAGCCATCGCTCTGATTGGATACCCAGCCTTCATCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040507:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(32.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGCTCCTGCAGGTC
R:
GGAAGATGAAGGCTGGGTATCC
Band lengths:
270-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]