GgaINT0125108 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1302409-1303916:+
Coord C1 exon
chr17:1302409-1302563
Coord A exon
chr17:1302564-1303862
Coord C2 exon
chr17:1303863-1303916
Length
1299 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ATTTGCTTTTTGTCCCACAGAAG
3' ss Score
10.64
Exon sequences
Seq C1 exon
TCTTTCTTTCCAGAGACCGTGAATCGGGCTACTATCGAGTTTTGTCCCATTATTACCCTGAGGGCACGGAGAAGTTGGCAGTGAAAGCCAGCAGCCTGGTCTTTGTGCTGGCAAGAGGAGCAAATGGATGGGCTACAGCCATACATGATGGGCAG
Seq A exon
GTAAAGAAAATAGATGGGATTTCTAGCAGAGACCACAGTCCTGCCTGCAAACAGGAGCTCAATGCAACCTTCTGAGCGTGTTCCCTGAGGACCCACCTGTAGCACTGAAGAGCTGAGTTCAGGTGCTCATTTCCACAGAGCAGTTGCTAACTGCACATGTGATGTCTCTGATTCTTGGCTCTCCCCAGCTTCTCCTGTTCACCTCTGTAGCTCCACAGGAGTGTCCTTTTGGGCACTCGTGCTCTCCACTTCGGGGGATCCTGTGGTGGAATCACATAGGATCATAGACCTCATAAAGGGTTACAGTATAGAGCAGTATTTGTCACCTGAGGGCTCTAACAGAGCCAAAGAGAGAGCTTGGTCCTTAACTAGATGGAGTCTGTAAGTAGGTGGTATACAAACAGATAAATGTAACAACATGGAAAAGTCTTTTGAAGACTGAAGCCACTTCTCATGTGTAATTAAATTCTTTGAATTAATGGAATACCTTCAGCCAGTGAGTATATTTACCTGCTTTTAAATAAATAAAAAATTCTTCACAAAACCACTAAAGATAGCTTGGGCTGGTTAAGCAATAGAGACTGTGCTTTGAGGACTGATAACAGATTAGAAGAGAAATAAAGGGTAGACATAAATTAATTGTTTGATTGATTGGTTTTAAGAAAGGGTGTCCTAACAGGATCTGTCCCTTAGCAGATTCCTAAGTGGTGTAGTGACAGCAATACAGTGTTTCTTAAGGCAGTAATGTTTCATGACAGTCAAACCATTCAGCATGGCCTGAAGCATAGACCTGGAGCTGCAGAAGGACCTGAATGTGTTCGTTTAGTCAATAAAGTGTCAGATGAATATCAAAGAAAAGAGGAACTAAACGTTGCACACACTGGGAAAAGAAAAGTAAGCATAATTATTCACAATGATCAGCTGAAATTAATAGAGATTGTTGGAAGACACAAGAACACTGCTGGGCTGGTACCCCTCAACATAGTTGGTGCTTCTCCCCCTAAGCATCTGTTTGAGGAGCAGGGTGTTGGGCCTGGTGGGTATTTGGTCTGTCACTTCACAGCCACTCAATTACTAACATTGGATGTTTTTCAGCAATTTCTGAGAACAAACCTTTTTTTAATGCTGCCTGTTGCTGGGCCTGCCATGGGCACATTTGTATTGCAATAAGGTGATGAAGTAGTGGTGCTTTGTAAGGGCACGAGCAGTGTAACTGGGGTTAACAGAAGATAGAGCTGGGTAGGCTGGAGCTCCTACAGCAGCAGCTCCTGTCTCAGTGATTTGCTTTTTGTCCCACAG
Seq C2 exon
AAGCTGCACATACCGACCTCTCTCCTGGAGCCTGCCTCAAAGATGGATAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTCTTTCCAGAGACCGTGA
R:
TTTATCCATCTTTGAGGCAGGCT
Band lengths:
206-1505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]