GgaINT0125109 @ galGal4
Intron Retention
Gene
ENSGALG00000008952 | noxa1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BWX5]
Coordinates
chr17:912324-913426:+
Coord C1 exon
chr17:912324-912377
Coord A exon
chr17:912378-913237
Coord C2 exon
chr17:913238-913426
Length
860 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCAACACTGTTCTGTTGCAGAAG
3' ss Score
8.16
Exon sequences
Seq C1 exon
AAGCTGCACATACCGACCTCTCTCCTGGAGCCTGCCTCAAAGATGGATAAATGG
Seq A exon
GTGAGCTGACAGCCTCGCAACCCAGGGGAAGAGGAAAGGACTGAGAAATATACATTCAGAACTTTTGTTTGTAAGACTATAATGGGATGGAATGGTAGCATAAGGCAAGAACAGTGTTTGAGCTCAGACACCTTGAGCAAAGACTGAGTGCTCTTGAACAACAGAAGGGTTAAGAGCAGGAAAAATGCTTGTTAGTTTCTCTGCATCTGATCTCTGTATAGCAAAGTGTAGATGCATGCCCAGGCCTCAGTGTCTCCCATCACAGGCTGATCTAGGTGTTGTTCTCTTATTTACTGGGGCTGATGGAGCACACAGACATGAGTAGCTGCCACAGGTCTCATGACTGTCACATTATTGTCACAATAAGTTTGAGGGCAGGCAGCATGTGATTGGCCAGCCTGCTCCCTACAGCCATCAGACAGCACAGAAGTGGGTAAGGAGTGCTCATATGTTCTAGTTCACCAGCACAGAGCAGGGAAATCTGCAGTGGGACAGAAATACTGCAGACAGGTGCAGCTTTTCACCTGGAGGCCATGTGCCTAAGTCCTCAACCCTCACCTTTGACTCAGGGAAATCTTTCTTCATCTCCCATCTCCTCCGTAGGCATCTCCACACATGATCCCAGTCCTTCTCCCATCTGAACCCGGTGTGACACAGACACTGGTTCCCCACAAGAGATTTTTTAATGCTGCTGTTTCCTCCGAGTAAATCCCTGACCATAACACTCACTTGGGCATTTGCTTCATGAGCTGGTCTCCCTGGGAAAATTTGTAACCTGTTGCAGCCTCTGACCCAAACACTGGCCTTGCCCACTCTCCAGTGTCTTCTGCTCACTCCTTTCCAACACTGTTCTGTTGCAG
Seq C2 exon
AAGATCGGTGATGGGATTCCTCTCCCTCCTGCCCAGGTGCCTCCCAGCCGGCTCCATGTGAAGCAGACACCAGGTACTCTCATGGACCAAGGACCTCCATGGGTGTTTTGTGAAGCTGCTGTGCCCAAAGAGGCTGTAGGATGCATTGGGAGGTTGCTGCCCTCTGAAGCAGTGGCTGCCTGTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACATACCGACCTCTCTCCT
R:
CAGCACACAGGCAGCCAC
Band lengths:
238-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]