GgaINT0125110 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1304328-1304833:+
Coord C1 exon
chr17:1304328-1304345
Coord A exon
chr17:1304346-1304776
Coord C2 exon
chr17:1304777-1304833
Length
431 bp
Sequences
Splice sites
5' ss Seq
GAAGTGGGT
5' ss Score
2.85
3' ss Seq
CCAACACTGTTCTGTTGCAGAAG
3' ss Score
8.16
Exon sequences
Seq C1 exon
CCATCAGACAGCACAGAA
Seq A exon
GTGGGTAAGGAGTGCTCATATGTTCTAGTTCACCAGCACAGAGCAGGGAAATCTGCAGTGGGACAGAAATACTGCAGACAGGTGCAGCTTTTCACCTGGAGGCCATGTGCCTAAGTCCTCAACCCTCACCTTTGACTCAGGGAAATCTTTCTTCATCTCCCATCTCCTCCGTAGGCATCTCCACACATGATCCCAGTCCTTCTCCCATCTGAACCCGGTGTGACACAGACACTGGTTCCCCACAAGAGATTTTTTAATGCTGCTGTTTCCTCCGAGTAAATCCCTGACCATAACACTCACTTGGGCATTTGCTTCATGAGCTGGTCTCCCTGGGAAAATTTGTAACCTGTTGCAGCCTCTGACCCAAACACTGGCCTTGCCCACTCTCCAGTGTCTTCTGCTCACTCCTTTCCAACACTGTTCTGTTGCAG
Seq C2 exon
AAGATCGGTGATGGGATTCCTCTCCCTCCTGCCCAGGTGCCTCCCAGCCGGCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.579
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]