GgaINT0125134 @ galGal4
Intron Retention
Gene
ENSGALG00000004664 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr17:5241457-5242632:-
Coord C1 exon
chr17:5242496-5242632
Coord A exon
chr17:5241544-5242495
Coord C2 exon
chr17:5241457-5241543
Length
952 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
CTCCATTCGTTTATTTATAGGCA
3' ss Score
6.47
Exon sequences
Seq C1 exon
ATCTGCAGAAGGAAGCGGAGCGCGGTGCCGCGCTGCAGCCAACGCTCTTCGTAGCGCTGCTCGGGTGCTCCGTCCTGCTGTACTTCAGGGTGTCCCTCATGGACCCGGGCTTCGTTAGGGCTGAAGAGGAAGCAGAG
Seq A exon
GTACATCACGTCGTGAATGGAAGACGCACTGGGGCTGCGCGATCCGTGGGCTTTTTGCCTTTGCTGCATAAGAACAACTTGAAATGGTTTCTCTTGCGCTTGGCACAAGGAAGACGTGTGCAACCCATTGGGTGATGAGGGCTACGGGGCTTTGACCCATGTTCTGTAACAGGAGGGGTTTGCGGCCTCTAAGTGCATCTGTTACCCCACACCTCCCTTAGCCAGGCACCCTGTGCCATCTGAGTGTGTCCTTCTTCCTCAGCAGCAGCTTCACCCCATGCAATATTTATACCTTGTGTTTTATGCAAGTCGCAGCTCATTGGTACGAGTGTGGAGAACCTGAATTGAAGGCCAGGCTTAGAAGAAAATACTCTCTGCAGCTCTGCTTACTGCTCTGCGTAGGGATTTGTTGCAGTGGGGCAGATGGAGGTGCTGAATAATAACCAAGGTGTAGCCTGCACCAGGCTCACTGCTTTGCTGGATAACACAAGGCATGATTAGTTCAAATCTTCCATTGTTAACGTTGATAGTGGCTGCGTTATGAGTAAACAGCACTCTTTGTACTGAAAAGACATCATGATCGTGTTTGGAAGTAAAGTCTAACCTTGTTTATTTATGTCCTGAATTGTAGTTGGGATCTGTGTGGTATCTTGTCCACAATTATTTCCACCTCTGTACAAGTGTTCTTTTGATGGTTACAGTAGCCTGTTGTCTCTGCCTGTACCCTAAGTATCTGCAGTGGAATTTCATGCCACTGTATTTATGTAGCAACTTCTGTACTTCGCTAGGAATTATTTTGTTTAACTTTCCTAATGACAGAGATAACCAGCACTGTGTAACTGTTAAGTGAAAGGGTCCAGATAGCTCAGTCTTGCCAAGCAGGCTGATAGCTGCCATACTTCAGACAGCAGCACATGATACATCTTTCATCGCTCCATTCGTTTATTTATAG
Seq C2 exon
GCAGACAAAAGTGAAGAGCAATGCACGTTGGTACCCCAGGTTTCAAGCAGTGTGAAGATGCGGCGTTGCGGCTACTGCATGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004664:ENSGALT00000007431:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(12.9=45.7)
A:
NA
C2:
PF0152915=zf-DHHC=FE(17.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGAAGGAAGCGGAG
R:
CTTCACCATGCAGTAGCCGC
Band lengths:
223-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]