GgaINT0125403 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7452293-7452543:-
Coord C1 exon
chr17:7452466-7452543
Coord A exon
chr17:7452380-7452465
Coord C2 exon
chr17:7452293-7452379
Length
86 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATCCCTCGCTGTCCCCCAGGGT
3' ss Score
9.05
Exon sequences
Seq C1 exon
GAGGGCACGTCCAAATTTGCCACCTTGGAGATCAACCCAAAGAGGGCCCAGAAGCGGCAGCAGCAGCAGCGAGAGATG
Seq A exon
GTGAGTGGCTGTTCCCGTGTCCCCATGTCCCTGCTGGGTGGCTGCCAGCTCTCCGCTGACCTCAGCCATCCCTCGCTGTCCCCCAG
Seq C2 exon
GGTGTGATGCAGGGCACCATTCCCTATCTCGGCACCTTCCTCACGGACCTGGTGATGCTCGACACCGCCATGAAGGATTTCCTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.5=100)
A:
NA
C2:
PF0061714=RasGEF=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTCCAAATTTGCCAC
R:
CAGGAAATCCTTCATGGCGGT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]