GgaINT0125404 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7451959-7452379:-
Coord C1 exon
chr17:7452293-7452379
Coord A exon
chr17:7451992-7452292
Coord C2 exon
chr17:7451959-7451991
Length
301 bp
Sequences
Splice sites
5' ss Seq
GACGTACGT
5' ss Score
9.08
3' ss Seq
CCCGGCTCCTTCTTTTGCAGGGA
3' ss Score
10.93
Exon sequences
Seq C1 exon
GGTGTGATGCAGGGCACCATTCCCTATCTCGGCACCTTCCTCACGGACCTGGTGATGCTCGACACCGCCATGAAGGATTTCCTGGAC
Seq A exon
GTACGTACCTCCATCTCTGTCCTCCTCCTTTCCTTCATGCCCAGACATCCCCAGAGCCTGGCGGTTCAAAGTGGAGGGTTGATCCCCAGATCACCTGCTTCTGTCCCTTTGGGCATCCCATAGCCGACGCTGCACCCCATGCACCCCATACGCAGCTCCGGCAGGCTCTGGCAACGGGCCGCTCTCGCAGCGCCCCCTGGCGGTCACGGCGCGCATAACAGCGGCAGCAGCCGGGAGCGGAGCGATGTCTGTCGCTCTCTGTCCCCGCTTCCCCACTGACGCCCGGCTCCTTCTTTTGCAG
Seq C2 exon
GGAGGGCTGATCAACTTTGAGAAGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412:ENSGALT00000005397:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.8=100)
A:
NA
C2:
PF0061714=RasGEF=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]