GgaINT0125881 @ galGal3
Intron Retention
Gene
ENSGALG00000004378 | ASB6
Description
NA
Coordinates
chr17:6205747-6206198:-
Coord C1 exon
chr17:6206182-6206198
Coord A exon
chr17:6205982-6206181
Coord C2 exon
chr17:6205747-6205981
Length
200 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AAATCCGTGTTTGTTTTCAGAGG
3' ss Score
7.61
Exon sequences
Seq C1 exon
GGCGGCGGGGCCGTGAG
Seq A exon
GTGAGGGCGGTGTGGCGGTGTTTTGTGTTCCGTCCTTCGGGCTTCGCTCCGCGGGGAGGGATTGGGGCCTCCGGGACCGTCTCGGTGGGGGTCTGCCGGCGCTGCCTCGAGGTTCTGGAGGGGGGTTCGGGGATTCTGGGAGCGAGGGAAGCGATGTTTGTTTGAACGCAACGCTACTCGAAATCCGTGTTTGTTTTCAG
Seq C2 exon
AGGAGGGGGCGGCCCCGTGGAAAGCAGGCCTGGCTCGGCCTGCGGGTTCCTGAGTGTGGGCAGGCGGCACTGCCATGCGGGAGGGCCCTGCGGGGCCTGTGTGCAGAGCACAGCGCTGGAGGATGCCTTTCCTACACGGCTTCCGCAGGATCACTCTCGAGTACCAGCCCTTGGTGGATGAGATCTTGGCGTTGCTGGCGCTACAGGATGCAGAAAGGCAGGACACGCTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004378:ENSGALT00000006983:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF127962=Ank_2=PU(2.0=3.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]