GgaINT0125969 @ galGal3
Intron Retention
Gene
ENSGALG00000003441 | GTF3C5
Description
NA
Coordinates
chr17:7445734-7447356:+
Coord C1 exon
chr17:7445734-7445876
Coord A exon
chr17:7445877-7446595
Coord C2 exon
chr17:7446596-7447356
Length
719 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGG
5' ss Score
8.6
3' ss Seq
TTTCTTTCTTCCTGATTAAGCTC
3' ss Score
6.65
Exon sequences
Seq C1 exon
CTTACAAAAAATCATCCATCGGAATGATGGCACAGAGTCAGAATGCACGGAGCGGGATGGGTGGTGCCTTCCAAAGACTAGTGATGATCTGCGAGATAGCATGTCCCTGATGATAAAGCAGATAATCAGATCCACAAGACCTG
Seq A exon
GTACGGATGCTTTTTGAACCTCAAAATGCCAAGCAGTATATTACCATTTATCTGATGACATAGAGACTGCGTTGTCATCAGCACTGGGAAGTAGTGCTGCTATATTCACCACCTCTGGCATTCCATGTTCTTGTGTATTACAGTGTGAGAACTGAGGCTGTTGTCCTGCCACATGACATGGGTTGGAGACTAGAAATAGCTAAGAGTAGAGGTTTTCTTATTCACTATTCCAGTATCACAGCCTTCAGGCTTGTAACACTATGTGGTGGAAAGTATAGCGATAATAGGATGGCAGAGACTTCAGCTGTAGTAAATGAGAACAAGCCCAAATGCAGCACCTGTGGACACAGAAACAAAAGAAAAAGGCTACTTACCTTTAGAAGTCCTCAGGTATGCAGGGATCTCCAGCAAGATCCCCTCACCTCCACTGCCAACCCTTAAATGAGGTCTGGGCAGGAATGGATCCTGGCTCCACCCCTTCCAGTCATTCAGATGTATTGCTTGCAGCTGAGCTCCCCTGGGTTGGCCCTGCCTTCCCACCAGGTGCTCAATCACTGCTTCAAGCCTTGACTTAGCATTTGTACTACACATGTGCAACCTTAACTGTGATCCTCAGACTTCTGCCTTATTCTCATTGTTTTATGAACTCTACTGCAAATTTCTTCAGGTTGCACTGAGAGATACATCATCATGTCTTCCTTTCTTTCTTCCTGATTAAG
Seq C2 exon
CTCTTTTCTCAAGTACAACAAGCAGTGAAGATGGCAAAGAACAGCTGGCATATGAGTCTGGAGAGGATGAGGATGATGAAGAGGAGGAGGAAGAAGAATTCAAGCCTTCTGATGGGAGTGAAAATGAGATGGAAACAGAAATTCTAGACTACGTGTGAACTCAGTGAGTAGTCTCACTGCTGCTGGACAGAATCTTCTTGGCTCTTGTTCCTTCAGTGCTGATGGTTCAGCAACCATACACAGGGTGTGTGAGAGCAGAACTTGCACTAAGCTGCTCAATACCCGTCTGCACTGACTGTGGTGCCTGGTGAAGGCTGTCATTTTGGATGTTCAGACACCATGACCCACATGGCATCTGGATGAGGTGCTATGAGATATGGTTCAGTAGGTTGTGGTAGTAATGGTGATGGGAGGACAATTGGACTAGGTGATCTTGTAGGTCCTTTTCAACCTTGTGATTCTATGATTCTATCATCCTATTTTTATAACTGTTGGATAATAAGCCTTCATAACATTGCCACCATGGAGATAACAGGTTTCTTACCAGGCTCCAACTGGTGTTTACTGTAGCAGCTCAACAGTCTCCCAAGAAAAGAGAATGGAAACCAGCTGGCAATACACCTTAAAACAGGAGAAACTATGTTGTCAAATCTCTGTAAGAAATACACCTCGTCTGGGTTGATGGCCATGTGGAAAATAGAAAAATGGTTTGAAGAGGTTACCATTCAGTTACAGAAATTAAAGAACTGCTGGCATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003441:ENSGALT00000039374:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGATAGCATGTCCCTGA
R:
ACAGTCAGTGCAGACGGGTAT
Band lengths:
353-1072
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]